Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02130

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02125 and ABID97_RS02130 overlap by 4 nucleotidesABID97_RS02130 and ABID97_RS02135 overlap by 4 nucleotidesABID97_RS02135 and ABID97_RS02140 are separated by 37 nucleotides ABID97_RS02125: ABID97_RS02125 - PilC/PilY family type IV pilus protein, at 426,060 to 430,451 _RS02125 ABID97_RS02130: ABID97_RS02130 - type IV pilin protein, at 430,448 to 430,909 _RS02130 ABID97_RS02135: ABID97_RS02135 - GspH/FimT family pseudopilin, at 430,906 to 431,481 _RS02135 ABID97_RS02140: ABID97_RS02140 - sugar transferase, at 431,519 to 432,115 _RS02140 Position (kb) 430 431Strain fitness (log2 ratio) -3 -2 -1 0 1at 429.462 kb on + strand, within ABID97_RS02125at 429.731 kb on + strand, within ABID97_RS02125at 429.731 kb on + strand, within ABID97_RS02125at 429.780 kb on + strand, within ABID97_RS02125at 429.781 kb on - strand, within ABID97_RS02125at 429.781 kb on - strand, within ABID97_RS02125at 429.804 kb on + strand, within ABID97_RS02125at 429.849 kb on + strand, within ABID97_RS02125at 429.849 kb on + strand, within ABID97_RS02125at 429.849 kb on + strand, within ABID97_RS02125at 429.850 kb on - strand, within ABID97_RS02125at 430.425 kb on + strandat 430.425 kb on + strandat 430.425 kb on + strandat 430.425 kb on + strandat 430.426 kb on - strandat 430.622 kb on + strand, within ABID97_RS02130at 430.622 kb on + strand, within ABID97_RS02130at 430.623 kb on - strand, within ABID97_RS02130at 430.624 kb on + strand, within ABID97_RS02130at 430.625 kb on - strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.647 kb on + strand, within ABID97_RS02130at 430.839 kb on + strand, within ABID97_RS02130at 430.840 kb on - strand, within ABID97_RS02130at 430.840 kb on - strand, within ABID97_RS02130at 430.840 kb on - strand, within ABID97_RS02130at 430.852 kb on + strand, within ABID97_RS02130at 431.165 kb on + strand, within ABID97_RS02135at 431.165 kb on + strand, within ABID97_RS02135at 431.236 kb on + strand, within ABID97_RS02135at 431.236 kb on + strand, within ABID97_RS02135at 431.237 kb on - strand, within ABID97_RS02135at 431.281 kb on + strand, within ABID97_RS02135at 431.479 kb on + strandat 431.480 kb on - strandat 431.545 kb on + strandat 431.545 kb on + strandat 431.546 kb on - strandat 431.546 kb on - strandat 431.550 kb on - strandat 431.592 kb on + strand, within ABID97_RS02140at 431.592 kb on + strand, within ABID97_RS02140at 431.592 kb on + strand, within ABID97_RS02140at 431.593 kb on - strand, within ABID97_RS02140at 431.593 kb on - strand, within ABID97_RS02140at 431.593 kb on - strand, within ABID97_RS02140at 431.755 kb on + strand, within ABID97_RS02140at 431.755 kb on + strand, within ABID97_RS02140at 431.756 kb on - strand, within ABID97_RS02140at 431.756 kb on - strand, within ABID97_RS02140

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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429,462 + ABID97_RS02125 0.77 -2.4
429,731 + ABID97_RS02125 0.84 -1.1
429,731 + ABID97_RS02125 0.84 -0.2
429,780 + ABID97_RS02125 0.85 -2.1
429,781 - ABID97_RS02125 0.85 -1.1
429,781 - ABID97_RS02125 0.85 +1.7
429,804 + ABID97_RS02125 0.85 -1.4
429,849 + ABID97_RS02125 0.86 -0.7
429,849 + ABID97_RS02125 0.86 -1.5
429,849 + ABID97_RS02125 0.86 -2.0
429,850 - ABID97_RS02125 0.86 +1.2
430,425 + -3.2
430,425 + -2.2
430,425 + -1.7
430,425 + -1.0
430,426 - -0.0
430,622 + ABID97_RS02130 0.38 -1.4
430,622 + ABID97_RS02130 0.38 -0.9
430,623 - ABID97_RS02130 0.38 -0.7
430,624 + ABID97_RS02130 0.38 -1.1
430,625 - ABID97_RS02130 0.38 -1.8
430,643 + ABID97_RS02130 0.42 +0.4
430,643 + ABID97_RS02130 0.42 -2.0
430,643 + ABID97_RS02130 0.42 -0.6
430,643 + ABID97_RS02130 0.42 -2.0
430,643 + ABID97_RS02130 0.42 -2.1
430,644 - ABID97_RS02130 0.42 -1.3
430,644 - ABID97_RS02130 0.42 -1.2
430,644 - ABID97_RS02130 0.42 -1.6
430,644 - ABID97_RS02130 0.42 -1.0
430,644 - ABID97_RS02130 0.42 -1.9
430,644 - ABID97_RS02130 0.42 -1.2
430,644 - ABID97_RS02130 0.42 -2.0
430,644 - ABID97_RS02130 0.42 -0.0
430,647 + ABID97_RS02130 0.43 -1.3
430,839 + ABID97_RS02130 0.85 +0.8
430,840 - ABID97_RS02130 0.85 -1.7
430,840 - ABID97_RS02130 0.85 -0.9
430,840 - ABID97_RS02130 0.85 -1.5
430,852 + ABID97_RS02130 0.87 -2.0
431,165 + ABID97_RS02135 0.45 -1.2
431,165 + ABID97_RS02135 0.45 -1.4
431,236 + ABID97_RS02135 0.57 -1.3
431,236 + ABID97_RS02135 0.57 -1.4
431,237 - ABID97_RS02135 0.57 -1.3
431,281 + ABID97_RS02135 0.65 -1.3
431,479 + -0.2
431,480 - -0.1
431,545 + -1.2
431,545 + -1.4
431,546 - -2.0
431,546 - -0.7
431,550 - -0.6
431,592 + ABID97_RS02140 0.12 -2.8
431,592 + ABID97_RS02140 0.12 -1.4
431,592 + ABID97_RS02140 0.12 -1.2
431,593 - ABID97_RS02140 0.12 -1.8
431,593 - ABID97_RS02140 0.12 -1.6
431,593 - ABID97_RS02140 0.12 -1.6
431,755 + ABID97_RS02140 0.40 -1.4
431,755 + ABID97_RS02140 0.40 -1.5
431,756 - ABID97_RS02140 0.40 -1.8
431,756 - ABID97_RS02140 0.40 -1.6

Or see this region's nucleotide sequence