Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01700

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01695 and ABID97_RS01700 overlap by 4 nucleotidesABID97_RS01700 and ABID97_RS01705 overlap by 4 nucleotidesABID97_RS01705 and ABID97_RS01710 are separated by 36 nucleotides ABID97_RS01695: ABID97_RS01695 - L-threonylcarbamoyladenylate synthase, at 333,036 to 334,037 _RS01695 ABID97_RS01700: ABID97_RS01700 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 334,034 to 335,224 _RS01700 ABID97_RS01705: ABID97_RS01705 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 335,221 to 335,769 _RS01705 ABID97_RS01710: ABID97_RS01710 - tetratricopeptide repeat protein, at 335,806 to 336,726 _RS01710 Position (kb) 334 335 336Strain fitness (log2 ratio) -1 0 1at 335.782 kb on - strandat 335.782 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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335,782 - +0.7
335,782 - +0.8

Or see this region's nucleotide sequence