Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01690

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01685 and ABID97_RS01690 are separated by 129 nucleotidesABID97_RS01690 and ABID97_RS01695 are separated by 38 nucleotides ABID97_RS01685: ABID97_RS01685 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 329,848 to 331,281 _RS01685 ABID97_RS01690: ABID97_RS01690 - prolyl oligopeptidase family serine peptidase, at 331,411 to 332,997 _RS01690 ABID97_RS01695: ABID97_RS01695 - L-threonylcarbamoyladenylate synthase, at 333,036 to 334,037 _RS01695 Position (kb) 331 332 333Strain fitness (log2 ratio) -2 -1 0 1at 330.467 kb on - strand, within ABID97_RS01685at 330.467 kb on - strand, within ABID97_RS01685at 330.634 kb on + strand, within ABID97_RS01685at 330.635 kb on - strand, within ABID97_RS01685at 330.635 kb on - strand, within ABID97_RS01685at 330.652 kb on + strand, within ABID97_RS01685at 330.652 kb on + strand, within ABID97_RS01685at 330.652 kb on + strand, within ABID97_RS01685at 330.652 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.802 kb on + strand, within ABID97_RS01685at 330.803 kb on - strand, within ABID97_RS01685at 330.803 kb on - strand, within ABID97_RS01685at 330.803 kb on - strand, within ABID97_RS01685at 331.163 kb on - strandat 331.163 kb on - strandat 331.189 kb on + strandat 331.189 kb on + strandat 331.305 kb on - strandat 331.305 kb on - strandat 331.305 kb on - strandat 331.305 kb on - strandat 331.305 kb on - strandat 331.309 kb on - strandat 331.309 kb on - strandat 331.321 kb on + strandat 331.322 kb on - strandat 331.322 kb on - strandat 331.431 kb on + strandat 331.702 kb on + strand, within ABID97_RS01690at 331.816 kb on + strand, within ABID97_RS01690at 331.817 kb on - strand, within ABID97_RS01690at 331.817 kb on - strand, within ABID97_RS01690at 331.817 kb on - strand, within ABID97_RS01690at 331.817 kb on - strand, within ABID97_RS01690at 331.846 kb on + strand, within ABID97_RS01690at 331.846 kb on + strand, within ABID97_RS01690at 331.846 kb on + strand, within ABID97_RS01690at 331.846 kb on + strand, within ABID97_RS01690at 331.846 kb on + strand, within ABID97_RS01690at 331.847 kb on - strand, within ABID97_RS01690at 331.847 kb on - strand, within ABID97_RS01690at 331.847 kb on - strand, within ABID97_RS01690at 331.847 kb on - strand, within ABID97_RS01690at 331.847 kb on - strand, within ABID97_RS01690at 331.930 kb on + strand, within ABID97_RS01690at 331.930 kb on + strand, within ABID97_RS01690at 331.930 kb on + strand, within ABID97_RS01690at 331.930 kb on + strand, within ABID97_RS01690at 331.931 kb on - strand, within ABID97_RS01690at 331.931 kb on - strand, within ABID97_RS01690at 331.952 kb on - strand, within ABID97_RS01690at 331.952 kb on - strand, within ABID97_RS01690at 331.952 kb on - strand, within ABID97_RS01690at 331.952 kb on - strand, within ABID97_RS01690at 331.960 kb on + strand, within ABID97_RS01690at 331.990 kb on + strand, within ABID97_RS01690at 332.116 kb on + strand, within ABID97_RS01690at 332.218 kb on + strand, within ABID97_RS01690at 332.218 kb on + strand, within ABID97_RS01690at 332.219 kb on - strand, within ABID97_RS01690at 332.219 kb on - strand, within ABID97_RS01690at 332.305 kb on + strand, within ABID97_RS01690at 332.305 kb on + strand, within ABID97_RS01690at 332.306 kb on - strand, within ABID97_RS01690at 332.306 kb on - strand, within ABID97_RS01690at 332.306 kb on - strand, within ABID97_RS01690at 332.326 kb on + strand, within ABID97_RS01690at 332.327 kb on - strand, within ABID97_RS01690at 332.339 kb on - strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.393 kb on - strand, within ABID97_RS01690at 332.393 kb on - strand, within ABID97_RS01690at 332.393 kb on - strand, within ABID97_RS01690at 332.393 kb on - strand, within ABID97_RS01690at 332.393 kb on - strand, within ABID97_RS01690at 332.393 kb on - strand, within ABID97_RS01690at 332.393 kb on - strand, within ABID97_RS01690at 332.476 kb on + strand, within ABID97_RS01690at 332.477 kb on - strand, within ABID97_RS01690at 332.477 kb on - strand, within ABID97_RS01690at 332.506 kb on + strand, within ABID97_RS01690at 332.507 kb on - strand, within ABID97_RS01690at 332.507 kb on - strand, within ABID97_RS01690at 332.744 kb on - strand, within ABID97_RS01690at 332.818 kb on + strand, within ABID97_RS01690at 332.818 kb on + strand, within ABID97_RS01690at 332.818 kb on + strand, within ABID97_RS01690

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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330,467 - ABID97_RS01685 0.43 +1.2
330,467 - ABID97_RS01685 0.43 -0.1
330,634 + ABID97_RS01685 0.55 +0.8
330,635 - ABID97_RS01685 0.55 -0.1
330,635 - ABID97_RS01685 0.55 +0.3
330,652 + ABID97_RS01685 0.56 -0.0
330,652 + ABID97_RS01685 0.56 +0.8
330,652 + ABID97_RS01685 0.56 +0.2
330,652 + ABID97_RS01685 0.56 +0.3
330,802 + ABID97_RS01685 0.67 +0.5
330,802 + ABID97_RS01685 0.67 +0.5
330,802 + ABID97_RS01685 0.67 +0.3
330,802 + ABID97_RS01685 0.67 -0.5
330,802 + ABID97_RS01685 0.67 -1.1
330,802 + ABID97_RS01685 0.67 -1.8
330,802 + ABID97_RS01685 0.67 +0.5
330,802 + ABID97_RS01685 0.67 -0.1
330,803 - ABID97_RS01685 0.67 -0.2
330,803 - ABID97_RS01685 0.67 +0.2
330,803 - ABID97_RS01685 0.67 +0.1
331,163 - -0.0
331,163 - +0.8
331,189 + -0.1
331,189 + +0.4
331,305 - +0.9
331,305 - -0.4
331,305 - -0.9
331,305 - -0.0
331,305 - -0.2
331,309 - +0.4
331,309 - -0.7
331,321 + -0.5
331,322 - +0.1
331,322 - -1.1
331,431 + +0.4
331,702 + ABID97_RS01690 0.18 +1.7
331,816 + ABID97_RS01690 0.26 -0.1
331,817 - ABID97_RS01690 0.26 -0.0
331,817 - ABID97_RS01690 0.26 -0.2
331,817 - ABID97_RS01690 0.26 +1.2
331,817 - ABID97_RS01690 0.26 -0.8
331,846 + ABID97_RS01690 0.27 -0.2
331,846 + ABID97_RS01690 0.27 +0.1
331,846 + ABID97_RS01690 0.27 -0.0
331,846 + ABID97_RS01690 0.27 +0.7
331,846 + ABID97_RS01690 0.27 +0.4
331,847 - ABID97_RS01690 0.27 +0.2
331,847 - ABID97_RS01690 0.27 +1.0
331,847 - ABID97_RS01690 0.27 +0.0
331,847 - ABID97_RS01690 0.27 -0.1
331,847 - ABID97_RS01690 0.27 -0.1
331,930 + ABID97_RS01690 0.33 +0.7
331,930 + ABID97_RS01690 0.33 +0.0
331,930 + ABID97_RS01690 0.33 +0.2
331,930 + ABID97_RS01690 0.33 +0.4
331,931 - ABID97_RS01690 0.33 -0.1
331,931 - ABID97_RS01690 0.33 -0.4
331,952 - ABID97_RS01690 0.34 +0.9
331,952 - ABID97_RS01690 0.34 -0.1
331,952 - ABID97_RS01690 0.34 +0.5
331,952 - ABID97_RS01690 0.34 +0.8
331,960 + ABID97_RS01690 0.35 +0.3
331,990 + ABID97_RS01690 0.36 -0.4
332,116 + ABID97_RS01690 0.44 -1.2
332,218 + ABID97_RS01690 0.51 +0.2
332,218 + ABID97_RS01690 0.51 +0.3
332,219 - ABID97_RS01690 0.51 -0.2
332,219 - ABID97_RS01690 0.51 +0.1
332,305 + ABID97_RS01690 0.56 -0.5
332,305 + ABID97_RS01690 0.56 +0.8
332,306 - ABID97_RS01690 0.56 -0.3
332,306 - ABID97_RS01690 0.56 -0.5
332,306 - ABID97_RS01690 0.56 -0.3
332,326 + ABID97_RS01690 0.58 -0.2
332,327 - ABID97_RS01690 0.58 -0.6
332,339 - ABID97_RS01690 0.58 -0.5
332,392 + ABID97_RS01690 0.62 +0.1
332,392 + ABID97_RS01690 0.62 -0.2
332,392 + ABID97_RS01690 0.62 +0.9
332,392 + ABID97_RS01690 0.62 +0.5
332,392 + ABID97_RS01690 0.62 -0.3
332,392 + ABID97_RS01690 0.62 -0.0
332,392 + ABID97_RS01690 0.62 -0.5
332,392 + ABID97_RS01690 0.62 +1.3
332,393 - ABID97_RS01690 0.62 +0.1
332,393 - ABID97_RS01690 0.62 -0.2
332,393 - ABID97_RS01690 0.62 -0.4
332,393 - ABID97_RS01690 0.62 -0.2
332,393 - ABID97_RS01690 0.62 -1.7
332,393 - ABID97_RS01690 0.62 +0.0
332,393 - ABID97_RS01690 0.62 +0.5
332,476 + ABID97_RS01690 0.67 +0.3
332,477 - ABID97_RS01690 0.67 -0.3
332,477 - ABID97_RS01690 0.67 -0.3
332,506 + ABID97_RS01690 0.69 +0.9
332,507 - ABID97_RS01690 0.69 +0.3
332,507 - ABID97_RS01690 0.69 +0.3
332,744 - ABID97_RS01690 0.84 -0.3
332,818 + ABID97_RS01690 0.89 +1.7
332,818 + ABID97_RS01690 0.89 -0.1
332,818 + ABID97_RS01690 0.89 +0.3

Or see this region's nucleotide sequence