Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01640 and ABID97_RS01645 are separated by 138 nucleotides ABID97_RS01645 and ABID97_RS01650 are separated by 12 nucleotides ABID97_RS01650 and ABID97_RS01655 are separated by 33 nucleotides ABID97_RS01655 and ABID97_RS01660 overlap by 4 nucleotides
ABID97_RS01640: ABID97_RS01640 - hypothetical protein, at 322,733 to 323,587
_RS01640
ABID97_RS01645: ABID97_RS01645 - helix-turn-helix transcriptional regulator, at 323,726 to 324,460
_RS01645
ABID97_RS01650: ABID97_RS01650 - orotidine-5'-phosphate decarboxylase, at 324,473 to 325,297
_RS01650
ABID97_RS01655: ABID97_RS01655 - uracil-DNA glycosylase family protein, at 325,331 to 326,077
_RS01655
ABID97_RS01660: ABID97_RS01660 - ribosomal protein S18-alanine N-acetyltransferase, at 326,074 to 326,616
_RS01660
Position (kb) 324
325
326 Strain fitness (log2 ratio) -1
0
1 at 323.701 kb on + strand at 323.789 kb on + strand at 323.789 kb on + strand at 323.789 kb on + strand at 323.790 kb on - strand at 323.790 kb on - strand at 324.059 kb on + strand, within ABID97_RS01645 at 324.228 kb on - strand, within ABID97_RS01645 at 324.228 kb on - strand, within ABID97_RS01645 at 324.230 kb on + strand, within ABID97_RS01645 at 324.230 kb on + strand, within ABID97_RS01645 at 324.789 kb on + strand, within ABID97_RS01650 at 325.108 kb on - strand, within ABID97_RS01650 at 325.176 kb on + strand, within ABID97_RS01650 at 325.176 kb on + strand, within ABID97_RS01650 at 325.310 kb on + strand at 326.067 kb on - strand at 326.067 kb on - strand at 326.166 kb on - strand, within ABID97_RS01660 at 326.207 kb on + strand, within ABID97_RS01660 at 326.207 kb on + strand, within ABID97_RS01660 at 326.207 kb on + strand, within ABID97_RS01660 at 326.207 kb on + strand, within ABID97_RS01660 at 326.207 kb on + strand, within ABID97_RS01660 at 326.207 kb on + strand, within ABID97_RS01660 at 326.208 kb on - strand, within ABID97_RS01660 at 326.208 kb on - strand, within ABID97_RS01660 at 326.208 kb on - strand, within ABID97_RS01660 at 326.208 kb on - strand, within ABID97_RS01660 at 326.208 kb on - strand, within ABID97_RS01660 at 326.208 kb on - strand, within ABID97_RS01660 at 326.208 kb on - strand, within ABID97_RS01660
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 323,701 + -0.4 323,789 + -0.4 323,789 + -0.1 323,789 + +0.2 323,790 - -0.3 323,790 - -0.9 324,059 + ABID97_RS01645 0.45 -1.0 324,228 - ABID97_RS01645 0.68 -0.4 324,228 - ABID97_RS01645 0.68 -0.2 324,230 + ABID97_RS01645 0.69 -0.9 324,230 + ABID97_RS01645 0.69 -0.5 324,789 + ABID97_RS01650 0.38 +0.3 325,108 - ABID97_RS01650 0.77 +0.3 325,176 + ABID97_RS01650 0.85 +0.2 325,176 + ABID97_RS01650 0.85 +0.8 325,310 + -0.5 326,067 - +0.6 326,067 - -0.0 326,166 - ABID97_RS01660 0.17 +0.3 326,207 + ABID97_RS01660 0.24 -0.2 326,207 + ABID97_RS01660 0.24 +0.0 326,207 + ABID97_RS01660 0.24 -0.7 326,207 + ABID97_RS01660 0.24 -0.1 326,207 + ABID97_RS01660 0.24 -1.2 326,207 + ABID97_RS01660 0.24 +0.2 326,208 - ABID97_RS01660 0.25 +0.4 326,208 - ABID97_RS01660 0.25 +0.3 326,208 - ABID97_RS01660 0.25 -0.6 326,208 - ABID97_RS01660 0.25 +0.1 326,208 - ABID97_RS01660 0.25 -0.1 326,208 - ABID97_RS01660 0.25 -0.0 326,208 - ABID97_RS01660 0.25 +0.1
Or see this region's nucleotide sequence