Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01200

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01195 and ABID97_RS01200 are separated by 19 nucleotidesABID97_RS01200 and ABID97_RS01205 are separated by 6 nucleotides ABID97_RS01195: ABID97_RS01195 - 2-hydroxyacid dehydrogenase, at 245,177 to 246,097 _RS01195 ABID97_RS01200: ABID97_RS01200 - L-idonate 5-dehydrogenase, at 246,117 to 247,190 _RS01200 ABID97_RS01205: ABID97_RS01205 - LacI family DNA-binding transcriptional regulator, at 247,197 to 248,207 _RS01205 Position (kb) 246 247 248Strain fitness (log2 ratio) -1 0 1at 245.226 kb on - strandat 245.670 kb on - strand, within ABID97_RS01195at 246.131 kb on + strandat 246.132 kb on - strandat 246.132 kb on - strandat 246.132 kb on - strandat 246.132 kb on - strandat 246.255 kb on + strand, within ABID97_RS01200at 246.256 kb on - strand, within ABID97_RS01200at 247.610 kb on - strand, within ABID97_RS01205at 248.071 kb on + strand, within ABID97_RS01205

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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245,226 - +0.0
245,670 - ABID97_RS01195 0.54 -0.4
246,131 + -0.3
246,132 - +0.6
246,132 - -0.2
246,132 - +0.4
246,132 - -0.2
246,255 + ABID97_RS01200 0.13 +0.1
246,256 - ABID97_RS01200 0.13 -1.1
247,610 - ABID97_RS01205 0.41 -0.1
248,071 + ABID97_RS01205 0.86 +0.6

Or see this region's nucleotide sequence