Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4382

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4381 and Echvi_4382 overlap by 1 nucleotidesEchvi_4382 and Echvi_4383 overlap by 4 nucleotidesEchvi_4383 and Echvi_4384 are separated by 230 nucleotides Echvi_4381: Echvi_4381 - Type IV secretory pathway, VirD4 components, at 5,238,197 to 5,240,179 _4381 Echvi_4382: Echvi_4382 - Relaxase/Mobilisation nuclease domain., at 5,240,179 to 5,241,447 _4382 Echvi_4383: Echvi_4383 - hypothetical protein, at 5,241,444 to 5,241,824 _4383 Echvi_4384: Echvi_4384 - Transposase and inactivated derivatives, at 5,242,055 to 5,243,608 _4384 Position (kb) 5240 5241 5242Strain fitness (log2 ratio) -2 -1 0 1 2at 5239.188 kb on + strand, within Echvi_4381at 5239.262 kb on - strand, within Echvi_4381at 5239.392 kb on + strand, within Echvi_4381at 5239.392 kb on + strand, within Echvi_4381at 5239.393 kb on - strand, within Echvi_4381at 5239.393 kb on - strand, within Echvi_4381at 5239.406 kb on + strand, within Echvi_4381at 5239.441 kb on + strand, within Echvi_4381at 5239.443 kb on + strand, within Echvi_4381at 5239.483 kb on + strand, within Echvi_4381at 5239.484 kb on - strand, within Echvi_4381at 5239.484 kb on - strand, within Echvi_4381at 5239.484 kb on - strand, within Echvi_4381at 5239.506 kb on - strand, within Echvi_4381at 5239.506 kb on - strand, within Echvi_4381at 5239.506 kb on - strand, within Echvi_4381at 5239.506 kb on - strand, within Echvi_4381at 5239.539 kb on + strand, within Echvi_4381at 5239.539 kb on + strand, within Echvi_4381at 5239.539 kb on + strand, within Echvi_4381at 5239.635 kb on + strand, within Echvi_4381at 5239.636 kb on - strand, within Echvi_4381at 5239.637 kb on + strand, within Echvi_4381at 5239.756 kb on + strand, within Echvi_4381at 5239.756 kb on + strand, within Echvi_4381at 5239.756 kb on + strand, within Echvi_4381at 5239.756 kb on + strand, within Echvi_4381at 5239.757 kb on - strand, within Echvi_4381at 5239.757 kb on - strand, within Echvi_4381at 5239.770 kb on - strand, within Echvi_4381at 5239.777 kb on + strand, within Echvi_4381at 5239.777 kb on + strand, within Echvi_4381at 5239.778 kb on - strand, within Echvi_4381at 5239.783 kb on - strand, within Echvi_4381at 5239.806 kb on + strand, within Echvi_4381at 5239.838 kb on + strand, within Echvi_4381at 5239.914 kb on - strand, within Echvi_4381at 5239.956 kb on + strand, within Echvi_4381at 5239.956 kb on + strand, within Echvi_4381at 5239.957 kb on - strand, within Echvi_4381at 5239.957 kb on - strand, within Echvi_4381at 5239.973 kb on + strand, within Echvi_4381at 5239.976 kb on + strand, within Echvi_4381at 5240.033 kb on + strandat 5240.033 kb on + strandat 5240.092 kb on - strandat 5240.120 kb on + strandat 5240.120 kb on + strandat 5240.120 kb on + strandat 5240.121 kb on - strandat 5240.146 kb on + strandat 5240.181 kb on - strandat 5240.229 kb on + strandat 5240.229 kb on + strandat 5240.230 kb on - strandat 5240.421 kb on + strand, within Echvi_4382at 5240.422 kb on - strand, within Echvi_4382at 5240.495 kb on - strand, within Echvi_4382at 5240.590 kb on + strand, within Echvi_4382at 5240.590 kb on + strand, within Echvi_4382at 5240.683 kb on - strand, within Echvi_4382at 5240.765 kb on + strand, within Echvi_4382at 5240.857 kb on + strand, within Echvi_4382at 5240.871 kb on + strand, within Echvi_4382at 5240.928 kb on + strand, within Echvi_4382at 5240.928 kb on + strand, within Echvi_4382at 5240.929 kb on - strand, within Echvi_4382at 5241.090 kb on + strand, within Echvi_4382at 5241.090 kb on + strand, within Echvi_4382at 5241.091 kb on - strand, within Echvi_4382at 5241.091 kb on - strand, within Echvi_4382at 5241.091 kb on - strand, within Echvi_4382at 5241.093 kb on + strand, within Echvi_4382at 5241.094 kb on - strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.120 kb on - strand, within Echvi_4382at 5241.123 kb on + strand, within Echvi_4382at 5241.123 kb on + strand, within Echvi_4382at 5241.123 kb on + strand, within Echvi_4382at 5241.123 kb on + strand, within Echvi_4382at 5241.124 kb on - strand, within Echvi_4382at 5241.124 kb on - strand, within Echvi_4382at 5241.129 kb on + strand, within Echvi_4382at 5241.129 kb on + strand, within Echvi_4382at 5241.130 kb on - strand, within Echvi_4382at 5241.130 kb on - strand, within Echvi_4382at 5241.179 kb on + strand, within Echvi_4382at 5241.180 kb on - strand, within Echvi_4382at 5241.190 kb on + strand, within Echvi_4382at 5241.191 kb on - strand, within Echvi_4382at 5241.194 kb on + strand, within Echvi_4382at 5241.194 kb on + strand, within Echvi_4382at 5241.246 kb on + strand, within Echvi_4382at 5241.271 kb on - strand, within Echvi_4382at 5241.287 kb on + strand, within Echvi_4382at 5241.287 kb on + strand, within Echvi_4382at 5241.288 kb on - strand, within Echvi_4382at 5241.288 kb on - strand, within Echvi_4382at 5241.288 kb on - strand, within Echvi_4382at 5241.300 kb on - strand, within Echvi_4382at 5241.325 kb on - strandat 5241.399 kb on - strandat 5241.399 kb on - strandat 5241.401 kb on + strandat 5241.402 kb on - strandat 5241.415 kb on + strandat 5241.415 kb on + strandat 5241.415 kb on + strandat 5241.416 kb on - strandat 5241.416 kb on - strandat 5241.427 kb on + strandat 5241.428 kb on - strandat 5241.433 kb on + strandat 5241.434 kb on - strandat 5241.680 kb on + strand, within Echvi_4383at 5241.680 kb on + strand, within Echvi_4383at 5241.681 kb on - strand, within Echvi_4383at 5241.848 kb on - strandat 5241.848 kb on - strandat 5241.923 kb on - strandat 5241.925 kb on + strandat 5241.926 kb on - strandat 5241.984 kb on + strandat 5241.984 kb on + strandat 5241.984 kb on + strandat 5241.984 kb on + strandat 5241.985 kb on - strandat 5241.985 kb on - strandat 5241.985 kb on - strandat 5242.016 kb on + strandat 5242.040 kb on - strandat 5242.040 kb on - strandat 5242.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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5,239,188 + Echvi_4381 0.50 +0.5
5,239,262 - Echvi_4381 0.54 -0.0
5,239,392 + Echvi_4381 0.60 -0.1
5,239,392 + Echvi_4381 0.60 +0.9
5,239,393 - Echvi_4381 0.60 -0.5
5,239,393 - Echvi_4381 0.60 -0.2
5,239,406 + Echvi_4381 0.61 +0.3
5,239,441 + Echvi_4381 0.63 -1.1
5,239,443 + Echvi_4381 0.63 +1.4
5,239,483 + Echvi_4381 0.65 +1.1
5,239,484 - Echvi_4381 0.65 -1.0
5,239,484 - Echvi_4381 0.65 +1.6
5,239,484 - Echvi_4381 0.65 +0.2
5,239,506 - Echvi_4381 0.66 +0.5
5,239,506 - Echvi_4381 0.66 -1.5
5,239,506 - Echvi_4381 0.66 -0.4
5,239,506 - Echvi_4381 0.66 +0.0
5,239,539 + Echvi_4381 0.68 +1.5
5,239,539 + Echvi_4381 0.68 -0.8
5,239,539 + Echvi_4381 0.68 +0.1
5,239,635 + Echvi_4381 0.73 +0.5
5,239,636 - Echvi_4381 0.73 +1.5
5,239,637 + Echvi_4381 0.73 +0.5
5,239,756 + Echvi_4381 0.79 +0.3
5,239,756 + Echvi_4381 0.79 -2.1
5,239,756 + Echvi_4381 0.79 +0.3
5,239,756 + Echvi_4381 0.79 -0.1
5,239,757 - Echvi_4381 0.79 -0.5
5,239,757 - Echvi_4381 0.79 -0.3
5,239,770 - Echvi_4381 0.79 -0.5
5,239,777 + Echvi_4381 0.80 -0.5
5,239,777 + Echvi_4381 0.80 -1.2
5,239,778 - Echvi_4381 0.80 +0.3
5,239,783 - Echvi_4381 0.80 +0.1
5,239,806 + Echvi_4381 0.81 -0.8
5,239,838 + Echvi_4381 0.83 -0.2
5,239,914 - Echvi_4381 0.87 +0.6
5,239,956 + Echvi_4381 0.89 +0.5
5,239,956 + Echvi_4381 0.89 +0.6
5,239,957 - Echvi_4381 0.89 +1.8
5,239,957 - Echvi_4381 0.89 +0.9
5,239,973 + Echvi_4381 0.90 +1.4
5,239,976 + Echvi_4381 0.90 -1.0
5,240,033 + +0.2
5,240,033 + -0.8
5,240,092 - +0.3
5,240,120 + +1.5
5,240,120 + +1.1
5,240,120 + -0.3
5,240,121 - -2.0
5,240,146 + -0.5
5,240,181 - +0.5
5,240,229 + -2.1
5,240,229 + -0.1
5,240,230 - -0.3
5,240,421 + Echvi_4382 0.19 -0.2
5,240,422 - Echvi_4382 0.19 -2.3
5,240,495 - Echvi_4382 0.25 -0.7
5,240,590 + Echvi_4382 0.32 +0.4
5,240,590 + Echvi_4382 0.32 -0.5
5,240,683 - Echvi_4382 0.40 +0.0
5,240,765 + Echvi_4382 0.46 +0.2
5,240,857 + Echvi_4382 0.53 -0.7
5,240,871 + Echvi_4382 0.55 +1.4
5,240,928 + Echvi_4382 0.59 -1.3
5,240,928 + Echvi_4382 0.59 -0.8
5,240,929 - Echvi_4382 0.59 +0.1
5,241,090 + Echvi_4382 0.72 +2.1
5,241,090 + Echvi_4382 0.72 +0.1
5,241,091 - Echvi_4382 0.72 -0.5
5,241,091 - Echvi_4382 0.72 +0.4
5,241,091 - Echvi_4382 0.72 -0.9
5,241,093 + Echvi_4382 0.72 +0.5
5,241,094 - Echvi_4382 0.72 -1.4
5,241,106 + Echvi_4382 0.73 +0.5
5,241,106 + Echvi_4382 0.73 -0.4
5,241,106 + Echvi_4382 0.73 -0.4
5,241,106 + Echvi_4382 0.73 -0.7
5,241,106 + Echvi_4382 0.73 +0.4
5,241,106 + Echvi_4382 0.73 +0.8
5,241,106 + Echvi_4382 0.73 -0.2
5,241,107 - Echvi_4382 0.73 -0.0
5,241,107 - Echvi_4382 0.73 -1.2
5,241,107 - Echvi_4382 0.73 +0.1
5,241,107 - Echvi_4382 0.73 -0.8
5,241,107 - Echvi_4382 0.73 -0.5
5,241,107 - Echvi_4382 0.73 -0.5
5,241,107 - Echvi_4382 0.73 -0.9
5,241,107 - Echvi_4382 0.73 +0.8
5,241,107 - Echvi_4382 0.73 -0.7
5,241,120 - Echvi_4382 0.74 +1.0
5,241,123 + Echvi_4382 0.74 -2.7
5,241,123 + Echvi_4382 0.74 -0.2
5,241,123 + Echvi_4382 0.74 +0.7
5,241,123 + Echvi_4382 0.74 +0.4
5,241,124 - Echvi_4382 0.74 -0.5
5,241,124 - Echvi_4382 0.74 +0.2
5,241,129 + Echvi_4382 0.75 -1.0
5,241,129 + Echvi_4382 0.75 -0.6
5,241,130 - Echvi_4382 0.75 -0.5
5,241,130 - Echvi_4382 0.75 +0.4
5,241,179 + Echvi_4382 0.79 +0.3
5,241,180 - Echvi_4382 0.79 -0.3
5,241,190 + Echvi_4382 0.80 -0.2
5,241,191 - Echvi_4382 0.80 +0.3
5,241,194 + Echvi_4382 0.80 +0.1
5,241,194 + Echvi_4382 0.80 -0.5
5,241,246 + Echvi_4382 0.84 -1.1
5,241,271 - Echvi_4382 0.86 -1.6
5,241,287 + Echvi_4382 0.87 -0.7
5,241,287 + Echvi_4382 0.87 -0.8
5,241,288 - Echvi_4382 0.87 +0.6
5,241,288 - Echvi_4382 0.87 -0.3
5,241,288 - Echvi_4382 0.87 -1.5
5,241,300 - Echvi_4382 0.88 -0.5
5,241,325 - +1.1
5,241,399 - -0.3
5,241,399 - -1.1
5,241,401 + +0.9
5,241,402 - -0.2
5,241,415 + -0.2
5,241,415 + -2.3
5,241,415 + +0.1
5,241,416 - -0.5
5,241,416 - -0.3
5,241,427 + -0.4
5,241,428 - -1.2
5,241,433 + -0.5
5,241,434 - -1.3
5,241,680 + Echvi_4383 0.62 +1.8
5,241,680 + Echvi_4383 0.62 -0.5
5,241,681 - Echvi_4383 0.62 +0.6
5,241,848 - -0.6
5,241,848 - +0.3
5,241,923 - -1.3
5,241,925 + -0.8
5,241,926 - +0.1
5,241,984 + +1.0
5,241,984 + +1.2
5,241,984 + +2.1
5,241,984 + +0.3
5,241,985 - -0.6
5,241,985 - -0.2
5,241,985 - -0.1
5,242,016 + -0.2
5,242,040 - -0.7
5,242,040 - +0.7
5,242,040 - +0.1

Or see this region's nucleotide sequence