Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3418

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3417 and Echvi_3418 are separated by 492 nucleotidesEchvi_3418 and Echvi_3419 are separated by 4 nucleotides Echvi_3417: Echvi_3417 - Predicted acyltransferases, at 4,042,583 to 4,044,640 _3417 Echvi_3418: Echvi_3418 - Transcriptional regulators, at 4,045,133 to 4,046,296 _3418 Echvi_3419: Echvi_3419 - Fucose permease, at 4,046,301 to 4,047,563 _3419 Position (kb) 4045 4046 4047Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4044.163 kb on + strand, within Echvi_3417at 4044.163 kb on + strand, within Echvi_3417at 4044.164 kb on - strand, within Echvi_3417at 4044.164 kb on - strand, within Echvi_3417at 4044.189 kb on + strand, within Echvi_3417at 4044.192 kb on - strand, within Echvi_3417at 4044.195 kb on - strand, within Echvi_3417at 4044.286 kb on - strand, within Echvi_3417at 4044.286 kb on - strand, within Echvi_3417at 4044.293 kb on - strand, within Echvi_3417at 4044.338 kb on - strand, within Echvi_3417at 4044.339 kb on + strand, within Echvi_3417at 4044.344 kb on + strand, within Echvi_3417at 4044.390 kb on - strand, within Echvi_3417at 4044.395 kb on + strand, within Echvi_3417at 4044.395 kb on + strand, within Echvi_3417at 4044.395 kb on + strand, within Echvi_3417at 4044.396 kb on - strand, within Echvi_3417at 4044.396 kb on - strand, within Echvi_3417at 4044.396 kb on - strand, within Echvi_3417at 4044.396 kb on - strand, within Echvi_3417at 4044.484 kb on + strandat 4044.484 kb on + strandat 4044.484 kb on + strandat 4044.485 kb on - strandat 4044.485 kb on - strandat 4044.487 kb on + strandat 4044.527 kb on + strandat 4044.528 kb on - strandat 4044.558 kb on - strandat 4044.602 kb on + strandat 4044.625 kb on - strandat 4044.846 kb on - strandat 4044.862 kb on - strandat 4044.917 kb on + strandat 4044.920 kb on + strandat 4044.921 kb on - strandat 4044.944 kb on + strandat 4044.949 kb on + strandat 4044.953 kb on + strandat 4044.953 kb on + strandat 4044.973 kb on + strandat 4044.973 kb on + strandat 4045.007 kb on - strandat 4045.033 kb on - strandat 4045.039 kb on + strandat 4045.040 kb on - strandat 4045.040 kb on - strandat 4045.044 kb on - strandat 4045.057 kb on - strandat 4045.084 kb on + strandat 4045.112 kb on + strandat 4045.130 kb on + strandat 4045.130 kb on + strandat 4045.134 kb on + strandat 4045.134 kb on + strandat 4045.149 kb on + strandat 4045.174 kb on + strandat 4045.174 kb on + strandat 4045.185 kb on - strandat 4045.192 kb on + strandat 4045.214 kb on - strandat 4045.311 kb on + strand, within Echvi_3418at 4045.315 kb on + strand, within Echvi_3418at 4045.315 kb on + strand, within Echvi_3418at 4045.317 kb on + strand, within Echvi_3418at 4045.340 kb on + strand, within Echvi_3418at 4045.340 kb on + strand, within Echvi_3418at 4045.377 kb on - strand, within Echvi_3418at 4045.385 kb on + strand, within Echvi_3418at 4045.442 kb on - strand, within Echvi_3418at 4045.452 kb on + strand, within Echvi_3418at 4045.453 kb on - strand, within Echvi_3418at 4045.453 kb on - strand, within Echvi_3418at 4045.453 kb on - strand, within Echvi_3418at 4045.453 kb on - strand, within Echvi_3418at 4045.453 kb on - strand, within Echvi_3418at 4045.470 kb on + strand, within Echvi_3418at 4045.470 kb on + strand, within Echvi_3418at 4045.470 kb on + strand, within Echvi_3418at 4045.470 kb on + strand, within Echvi_3418at 4045.471 kb on - strand, within Echvi_3418at 4045.471 kb on - strand, within Echvi_3418at 4045.471 kb on - strand, within Echvi_3418at 4045.471 kb on - strand, within Echvi_3418at 4045.473 kb on - strand, within Echvi_3418at 4045.473 kb on - strand, within Echvi_3418at 4045.516 kb on + strand, within Echvi_3418at 4045.567 kb on + strand, within Echvi_3418at 4045.578 kb on + strand, within Echvi_3418at 4045.578 kb on + strand, within Echvi_3418at 4045.578 kb on + strand, within Echvi_3418at 4045.578 kb on + strand, within Echvi_3418at 4045.579 kb on - strand, within Echvi_3418at 4045.579 kb on - strand, within Echvi_3418at 4045.628 kb on + strand, within Echvi_3418at 4045.655 kb on + strand, within Echvi_3418at 4045.693 kb on + strand, within Echvi_3418at 4045.694 kb on - strand, within Echvi_3418at 4045.706 kb on + strand, within Echvi_3418at 4045.706 kb on + strand, within Echvi_3418at 4045.706 kb on + strand, within Echvi_3418at 4045.706 kb on + strand, within Echvi_3418at 4045.707 kb on - strand, within Echvi_3418at 4045.717 kb on + strand, within Echvi_3418at 4045.718 kb on - strand, within Echvi_3418at 4045.718 kb on - strand, within Echvi_3418at 4045.801 kb on + strand, within Echvi_3418at 4045.801 kb on + strand, within Echvi_3418at 4045.803 kb on + strand, within Echvi_3418at 4045.803 kb on + strand, within Echvi_3418at 4045.804 kb on - strand, within Echvi_3418at 4045.804 kb on - strand, within Echvi_3418at 4045.806 kb on + strand, within Echvi_3418at 4045.806 kb on + strand, within Echvi_3418at 4045.807 kb on - strand, within Echvi_3418at 4045.813 kb on + strand, within Echvi_3418at 4045.846 kb on - strand, within Echvi_3418at 4045.855 kb on + strand, within Echvi_3418at 4045.855 kb on + strand, within Echvi_3418at 4045.855 kb on + strand, within Echvi_3418at 4045.855 kb on + strand, within Echvi_3418at 4045.855 kb on + strand, within Echvi_3418at 4045.856 kb on - strand, within Echvi_3418at 4045.856 kb on - strand, within Echvi_3418at 4045.856 kb on - strand, within Echvi_3418at 4045.856 kb on - strand, within Echvi_3418at 4045.856 kb on - strand, within Echvi_3418at 4045.856 kb on - strand, within Echvi_3418at 4045.858 kb on - strand, within Echvi_3418at 4045.858 kb on - strand, within Echvi_3418at 4045.858 kb on - strand, within Echvi_3418at 4045.858 kb on - strand, within Echvi_3418at 4045.921 kb on + strand, within Echvi_3418at 4045.929 kb on + strand, within Echvi_3418at 4045.929 kb on + strand, within Echvi_3418at 4045.991 kb on - strand, within Echvi_3418at 4045.991 kb on - strand, within Echvi_3418at 4046.008 kb on + strand, within Echvi_3418at 4046.097 kb on + strand, within Echvi_3418at 4046.097 kb on + strand, within Echvi_3418at 4046.098 kb on - strand, within Echvi_3418at 4046.099 kb on + strand, within Echvi_3418at 4046.099 kb on + strand, within Echvi_3418at 4046.100 kb on - strand, within Echvi_3418at 4046.108 kb on + strand, within Echvi_3418at 4046.109 kb on - strand, within Echvi_3418at 4046.109 kb on - strand, within Echvi_3418at 4046.111 kb on - strand, within Echvi_3418at 4046.111 kb on - strand, within Echvi_3418at 4046.149 kb on + strand, within Echvi_3418at 4046.149 kb on + strand, within Echvi_3418at 4046.149 kb on + strand, within Echvi_3418at 4046.150 kb on - strand, within Echvi_3418at 4046.175 kb on + strand, within Echvi_3418at 4046.178 kb on + strand, within Echvi_3418at 4046.179 kb on - strand, within Echvi_3418at 4046.179 kb on - strand, within Echvi_3418at 4046.277 kb on - strandat 4046.283 kb on - strandat 4046.283 kb on - strandat 4046.292 kb on + strandat 4046.293 kb on - strandat 4046.293 kb on - strandat 4046.296 kb on + strandat 4046.296 kb on + strandat 4046.296 kb on + strandat 4046.297 kb on - strandat 4046.297 kb on - strandat 4046.297 kb on - strandat 4046.336 kb on + strandat 4046.336 kb on + strandat 4046.336 kb on + strandat 4046.336 kb on + strandat 4046.336 kb on + strandat 4046.337 kb on - strandat 4046.337 kb on - strandat 4046.337 kb on - strandat 4046.337 kb on - strandat 4046.337 kb on - strandat 4046.337 kb on - strandat 4046.337 kb on - strandat 4046.343 kb on - strandat 4046.390 kb on - strandat 4046.390 kb on - strandat 4046.394 kb on + strandat 4046.400 kb on - strandat 4046.428 kb on - strand, within Echvi_3419at 4046.618 kb on + strand, within Echvi_3419at 4046.619 kb on - strand, within Echvi_3419at 4046.667 kb on + strand, within Echvi_3419at 4046.667 kb on + strand, within Echvi_3419at 4046.695 kb on - strand, within Echvi_3419at 4046.870 kb on - strand, within Echvi_3419at 4046.870 kb on - strand, within Echvi_3419at 4046.870 kb on - strand, within Echvi_3419at 4046.895 kb on + strand, within Echvi_3419at 4046.896 kb on - strand, within Echvi_3419at 4046.896 kb on - strand, within Echvi_3419at 4046.973 kb on + strand, within Echvi_3419at 4047.007 kb on - strand, within Echvi_3419at 4047.013 kb on + strand, within Echvi_3419at 4047.062 kb on + strand, within Echvi_3419at 4047.063 kb on - strand, within Echvi_3419at 4047.063 kb on - strand, within Echvi_3419at 4047.063 kb on - strand, within Echvi_3419at 4047.089 kb on + strand, within Echvi_3419at 4047.116 kb on - strand, within Echvi_3419at 4047.249 kb on - strand, within Echvi_3419at 4047.267 kb on + strand, within Echvi_3419at 4047.268 kb on - strand, within Echvi_3419at 4047.270 kb on + strand, within Echvi_3419at 4047.270 kb on + strand, within Echvi_3419at 4047.271 kb on - strand, within Echvi_3419at 4047.282 kb on - strand, within Echvi_3419

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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4,044,163 + Echvi_3417 0.77 +1.0
4,044,163 + Echvi_3417 0.77 -1.0
4,044,164 - Echvi_3417 0.77 -0.2
4,044,164 - Echvi_3417 0.77 -0.3
4,044,189 + Echvi_3417 0.78 -0.0
4,044,192 - Echvi_3417 0.78 +0.9
4,044,195 - Echvi_3417 0.78 -1.0
4,044,286 - Echvi_3417 0.83 +0.6
4,044,286 - Echvi_3417 0.83 -0.4
4,044,293 - Echvi_3417 0.83 -0.3
4,044,338 - Echvi_3417 0.85 -0.3
4,044,339 + Echvi_3417 0.85 +1.3
4,044,344 + Echvi_3417 0.86 -0.9
4,044,390 - Echvi_3417 0.88 -0.2
4,044,395 + Echvi_3417 0.88 +0.6
4,044,395 + Echvi_3417 0.88 -0.1
4,044,395 + Echvi_3417 0.88 +0.3
4,044,396 - Echvi_3417 0.88 -0.8
4,044,396 - Echvi_3417 0.88 +0.4
4,044,396 - Echvi_3417 0.88 -0.6
4,044,396 - Echvi_3417 0.88 -0.9
4,044,484 + +0.1
4,044,484 + +1.6
4,044,484 + +0.6
4,044,485 - -0.4
4,044,485 - -0.0
4,044,487 + +0.3
4,044,527 + -0.3
4,044,528 - -0.4
4,044,558 - +0.5
4,044,602 + -0.5
4,044,625 - -0.1
4,044,846 - -0.9
4,044,862 - +0.9
4,044,917 + +0.0
4,044,920 + -0.4
4,044,921 - -0.5
4,044,944 + -0.2
4,044,949 + +0.1
4,044,953 + -0.1
4,044,953 + -0.2
4,044,973 + -1.0
4,044,973 + +0.1
4,045,007 - +0.7
4,045,033 - -0.9
4,045,039 + +0.1
4,045,040 - -0.2
4,045,040 - -1.0
4,045,044 - -0.1
4,045,057 - +0.3
4,045,084 + +0.1
4,045,112 + +0.4
4,045,130 + -0.5
4,045,130 + +0.9
4,045,134 + -0.2
4,045,134 + -0.2
4,045,149 + -0.3
4,045,174 + +3.0
4,045,174 + +0.2
4,045,185 - -0.3
4,045,192 + -0.0
4,045,214 - +0.3
4,045,311 + Echvi_3418 0.15 +0.3
4,045,315 + Echvi_3418 0.16 -0.1
4,045,315 + Echvi_3418 0.16 +0.4
4,045,317 + Echvi_3418 0.16 -0.8
4,045,340 + Echvi_3418 0.18 +0.6
4,045,340 + Echvi_3418 0.18 -0.3
4,045,377 - Echvi_3418 0.21 -0.4
4,045,385 + Echvi_3418 0.22 +1.6
4,045,442 - Echvi_3418 0.27 -0.3
4,045,452 + Echvi_3418 0.27 -1.5
4,045,453 - Echvi_3418 0.27 -0.8
4,045,453 - Echvi_3418 0.27 -1.1
4,045,453 - Echvi_3418 0.27 +1.6
4,045,453 - Echvi_3418 0.27 +1.6
4,045,453 - Echvi_3418 0.27 +1.0
4,045,470 + Echvi_3418 0.29 +0.3
4,045,470 + Echvi_3418 0.29 -0.8
4,045,470 + Echvi_3418 0.29 -0.6
4,045,470 + Echvi_3418 0.29 -0.5
4,045,471 - Echvi_3418 0.29 -1.0
4,045,471 - Echvi_3418 0.29 +0.2
4,045,471 - Echvi_3418 0.29 +1.3
4,045,471 - Echvi_3418 0.29 +1.0
4,045,473 - Echvi_3418 0.29 -0.4
4,045,473 - Echvi_3418 0.29 -0.1
4,045,516 + Echvi_3418 0.33 -0.2
4,045,567 + Echvi_3418 0.37 -0.5
4,045,578 + Echvi_3418 0.38 -0.8
4,045,578 + Echvi_3418 0.38 +0.1
4,045,578 + Echvi_3418 0.38 -0.1
4,045,578 + Echvi_3418 0.38 -0.5
4,045,579 - Echvi_3418 0.38 -0.5
4,045,579 - Echvi_3418 0.38 -1.1
4,045,628 + Echvi_3418 0.43 -0.2
4,045,655 + Echvi_3418 0.45 +1.9
4,045,693 + Echvi_3418 0.48 -0.7
4,045,694 - Echvi_3418 0.48 +0.6
4,045,706 + Echvi_3418 0.49 +2.1
4,045,706 + Echvi_3418 0.49 -1.2
4,045,706 + Echvi_3418 0.49 +1.3
4,045,706 + Echvi_3418 0.49 -0.4
4,045,707 - Echvi_3418 0.49 +0.9
4,045,717 + Echvi_3418 0.50 -0.1
4,045,718 - Echvi_3418 0.50 -1.1
4,045,718 - Echvi_3418 0.50 +0.5
4,045,801 + Echvi_3418 0.57 +0.5
4,045,801 + Echvi_3418 0.57 +0.5
4,045,803 + Echvi_3418 0.58 +0.5
4,045,803 + Echvi_3418 0.58 +0.5
4,045,804 - Echvi_3418 0.58 +0.5
4,045,804 - Echvi_3418 0.58 -0.3
4,045,806 + Echvi_3418 0.58 +2.2
4,045,806 + Echvi_3418 0.58 +0.2
4,045,807 - Echvi_3418 0.58 +1.1
4,045,813 + Echvi_3418 0.58 -1.5
4,045,846 - Echvi_3418 0.61 +0.2
4,045,855 + Echvi_3418 0.62 -0.3
4,045,855 + Echvi_3418 0.62 +0.7
4,045,855 + Echvi_3418 0.62 +0.3
4,045,855 + Echvi_3418 0.62 +0.2
4,045,855 + Echvi_3418 0.62 -0.1
4,045,856 - Echvi_3418 0.62 -0.3
4,045,856 - Echvi_3418 0.62 -0.5
4,045,856 - Echvi_3418 0.62 -1.0
4,045,856 - Echvi_3418 0.62 +0.8
4,045,856 - Echvi_3418 0.62 -0.6
4,045,856 - Echvi_3418 0.62 +1.2
4,045,858 - Echvi_3418 0.62 -0.3
4,045,858 - Echvi_3418 0.62 +0.0
4,045,858 - Echvi_3418 0.62 +1.0
4,045,858 - Echvi_3418 0.62 -1.5
4,045,921 + Echvi_3418 0.68 -1.4
4,045,929 + Echvi_3418 0.68 +0.5
4,045,929 + Echvi_3418 0.68 -0.6
4,045,991 - Echvi_3418 0.74 +1.2
4,045,991 - Echvi_3418 0.74 +0.1
4,046,008 + Echvi_3418 0.75 +1.3
4,046,097 + Echvi_3418 0.83 +0.2
4,046,097 + Echvi_3418 0.83 +0.9
4,046,098 - Echvi_3418 0.83 -0.3
4,046,099 + Echvi_3418 0.83 +0.0
4,046,099 + Echvi_3418 0.83 -0.0
4,046,100 - Echvi_3418 0.83 +0.2
4,046,108 + Echvi_3418 0.84 -1.0
4,046,109 - Echvi_3418 0.84 +0.6
4,046,109 - Echvi_3418 0.84 +0.0
4,046,111 - Echvi_3418 0.84 +0.1
4,046,111 - Echvi_3418 0.84 -0.1
4,046,149 + Echvi_3418 0.87 -0.4
4,046,149 + Echvi_3418 0.87 +1.0
4,046,149 + Echvi_3418 0.87 -0.3
4,046,150 - Echvi_3418 0.87 -0.6
4,046,175 + Echvi_3418 0.90 -1.4
4,046,178 + Echvi_3418 0.90 +0.0
4,046,179 - Echvi_3418 0.90 +0.6
4,046,179 - Echvi_3418 0.90 +1.3
4,046,277 - -0.5
4,046,283 - +0.3
4,046,283 - +0.3
4,046,292 + -0.5
4,046,293 - -0.2
4,046,293 - +0.9
4,046,296 + -0.2
4,046,296 + +0.5
4,046,296 + +0.2
4,046,297 - +0.0
4,046,297 - -0.1
4,046,297 - +0.7
4,046,336 + -0.4
4,046,336 + +0.4
4,046,336 + -1.6
4,046,336 + +1.0
4,046,336 + -1.4
4,046,337 - -0.4
4,046,337 - +0.6
4,046,337 - +0.5
4,046,337 - +0.9
4,046,337 - -0.0
4,046,337 - -0.4
4,046,337 - -1.2
4,046,343 - -1.6
4,046,390 - -1.2
4,046,390 - -0.2
4,046,394 + +0.2
4,046,400 - -1.4
4,046,428 - Echvi_3419 0.10 -0.9
4,046,618 + Echvi_3419 0.25 -2.0
4,046,619 - Echvi_3419 0.25 +0.1
4,046,667 + Echvi_3419 0.29 -1.5
4,046,667 + Echvi_3419 0.29 +0.1
4,046,695 - Echvi_3419 0.31 -1.1
4,046,870 - Echvi_3419 0.45 +0.3
4,046,870 - Echvi_3419 0.45 +1.8
4,046,870 - Echvi_3419 0.45 -0.5
4,046,895 + Echvi_3419 0.47 -1.0
4,046,896 - Echvi_3419 0.47 -0.2
4,046,896 - Echvi_3419 0.47 -0.0
4,046,973 + Echvi_3419 0.53 -0.7
4,047,007 - Echvi_3419 0.56 +1.2
4,047,013 + Echvi_3419 0.56 -1.5
4,047,062 + Echvi_3419 0.60 +1.3
4,047,063 - Echvi_3419 0.60 -0.6
4,047,063 - Echvi_3419 0.60 -1.1
4,047,063 - Echvi_3419 0.60 -1.4
4,047,089 + Echvi_3419 0.62 +0.6
4,047,116 - Echvi_3419 0.65 -1.5
4,047,249 - Echvi_3419 0.75 +0.3
4,047,267 + Echvi_3419 0.76 -0.2
4,047,268 - Echvi_3419 0.77 -0.3
4,047,270 + Echvi_3419 0.77 +1.3
4,047,270 + Echvi_3419 0.77 -0.1
4,047,271 - Echvi_3419 0.77 +0.2
4,047,282 - Echvi_3419 0.78 -0.9

Or see this region's nucleotide sequence