Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0121

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0120 and Echvi_0121 are separated by 25 nucleotidesEchvi_0121 and Echvi_0122 overlap by 4 nucleotides Echvi_0120: Echvi_0120 - 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase / chorismate mutase (EC 2.5.1.54; EC 5.4.99.5) (from data), at 119,948 to 121,051 _0120 Echvi_0121: Echvi_0121 - 3-dehydroquinate synthase, at 121,077 to 122,114 _0121 Echvi_0122: Echvi_0122 - 5-enolpyruvylshikimate-3-phosphate synthase, at 122,111 to 123,328 _0122 Position (kb) 121 122 123Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 120.202 kb on + strand, within Echvi_0120at 120.214 kb on - strand, within Echvi_0120at 120.238 kb on - strand, within Echvi_0120at 120.244 kb on - strand, within Echvi_0120at 120.255 kb on + strand, within Echvi_0120at 120.255 kb on + strand, within Echvi_0120at 120.288 kb on + strand, within Echvi_0120at 120.346 kb on + strand, within Echvi_0120at 120.415 kb on - strand, within Echvi_0120at 120.418 kb on + strand, within Echvi_0120at 120.418 kb on + strand, within Echvi_0120at 120.419 kb on - strand, within Echvi_0120at 120.551 kb on - strand, within Echvi_0120at 120.625 kb on - strand, within Echvi_0120at 120.846 kb on + strand, within Echvi_0120at 120.846 kb on + strand, within Echvi_0120at 120.847 kb on - strand, within Echvi_0120at 120.868 kb on + strand, within Echvi_0120at 120.868 kb on + strand, within Echvi_0120at 120.869 kb on - strand, within Echvi_0120at 120.869 kb on - strand, within Echvi_0120at 120.869 kb on - strand, within Echvi_0120at 120.996 kb on + strandat 121.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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120,202 + Echvi_0120 0.23 -4.0
120,214 - Echvi_0120 0.24 -3.1
120,238 - Echvi_0120 0.26 -2.7
120,244 - Echvi_0120 0.27 -2.6
120,255 + Echvi_0120 0.28 -3.0
120,255 + Echvi_0120 0.28 -3.2
120,288 + Echvi_0120 0.31 -4.0
120,346 + Echvi_0120 0.36 -2.9
120,415 - Echvi_0120 0.42 -0.5
120,418 + Echvi_0120 0.43 -3.5
120,418 + Echvi_0120 0.43 -4.3
120,419 - Echvi_0120 0.43 -3.2
120,551 - Echvi_0120 0.55 -1.3
120,625 - Echvi_0120 0.61 +0.3
120,846 + Echvi_0120 0.81 -0.1
120,846 + Echvi_0120 0.81 +0.3
120,847 - Echvi_0120 0.81 -2.3
120,868 + Echvi_0120 0.83 -2.0
120,868 + Echvi_0120 0.83 -0.7
120,869 - Echvi_0120 0.83 -1.1
120,869 - Echvi_0120 0.83 -2.0
120,869 - Echvi_0120 0.83 -3.9
120,996 + -2.2
121,061 - -0.5

Or see this region's nucleotide sequence