Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21005

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20995 and CA264_21000 are separated by 39 nucleotidesCA264_21000 and CA264_21005 are separated by 4 nucleotidesCA264_21005 and CA264_21010 are separated by 17 nucleotidesCA264_21010 and CA264_21015 are separated by 85 nucleotidesCA264_21015 and CA264_21020 overlap by 14 nucleotides CA264_20995: CA264_20995 - plasmid transfer protein, at 61,890 to 62,561 _20995 CA264_21000: CA264_21000 - hypothetical protein, at 62,601 to 63,200 _21000 CA264_21005: CA264_21005 - plasmid transfer protein, at 63,205 to 64,200 _21005 CA264_21010: CA264_21010 - conjugative transposon protein TraK, at 64,218 to 64,826 _21010 CA264_21015: CA264_21015 - hypothetical protein, at 64,912 to 65,190 _21015 CA264_21020: CA264_21020 - conjugative transposon protein TraM, at 65,177 to 66,355 _21020 Position (kb) 63 64 65Strain fitness (log2 ratio) -2 -1 0 1 2at 62.288 kb on + strand, within CA264_20995at 62.303 kb on + strand, within CA264_20995at 62.304 kb on - strand, within CA264_20995at 62.307 kb on + strandat 62.308 kb on - strand, within CA264_20995at 62.308 kb on - strand, within CA264_20995at 62.422 kb on - strand, within CA264_20995at 62.542 kb on - strandat 62.542 kb on - strandat 62.564 kb on + strandat 62.576 kb on + strandat 62.588 kb on - strandat 62.588 kb on - strandat 62.593 kb on + strandat 62.623 kb on + strandat 62.683 kb on - strand, within CA264_21000at 62.683 kb on - strand, within CA264_21000at 62.683 kb on - strand, within CA264_21000at 62.742 kb on - strand, within CA264_21000at 62.760 kb on + strand, within CA264_21000at 62.784 kb on - strand, within CA264_21000at 62.805 kb on - strand, within CA264_21000at 62.805 kb on - strand, within CA264_21000at 62.861 kb on - strand, within CA264_21000at 62.869 kb on + strand, within CA264_21000at 62.870 kb on - strand, within CA264_21000at 62.870 kb on - strand, within CA264_21000at 62.871 kb on + strand, within CA264_21000at 62.931 kb on + strand, within CA264_21000at 63.015 kb on - strand, within CA264_21000at 63.060 kb on - strand, within CA264_21000at 63.066 kb on - strand, within CA264_21000at 63.066 kb on - strand, within CA264_21000at 63.078 kb on + strand, within CA264_21000at 63.117 kb on + strand, within CA264_21000at 63.117 kb on + strand, within CA264_21000at 63.117 kb on + strand, within CA264_21000at 63.118 kb on - strand, within CA264_21000at 63.118 kb on - strand, within CA264_21000at 63.131 kb on + strand, within CA264_21000at 63.222 kb on + strandat 63.222 kb on + strandat 63.222 kb on + strandat 63.222 kb on + strandat 63.223 kb on - strandat 63.263 kb on + strandat 63.263 kb on + strandat 63.264 kb on - strandat 63.264 kb on - strandat 63.264 kb on - strandat 63.329 kb on - strand, within CA264_21005at 63.347 kb on - strand, within CA264_21005at 63.347 kb on - strand, within CA264_21005at 63.439 kb on - strand, within CA264_21005at 63.493 kb on + strand, within CA264_21005at 63.494 kb on - strand, within CA264_21005at 63.506 kb on + strand, within CA264_21005at 63.680 kb on - strand, within CA264_21005at 63.682 kb on + strand, within CA264_21005at 63.728 kb on + strand, within CA264_21005at 63.728 kb on + strand, within CA264_21005at 63.766 kb on + strand, within CA264_21005at 63.766 kb on + strand, within CA264_21005at 63.767 kb on - strand, within CA264_21005at 63.767 kb on - strand, within CA264_21005at 63.767 kb on - strand, within CA264_21005at 63.772 kb on - strand, within CA264_21005at 63.772 kb on - strand, within CA264_21005at 63.775 kb on + strand, within CA264_21005at 63.837 kb on + strand, within CA264_21005at 63.920 kb on - strand, within CA264_21005at 63.927 kb on + strand, within CA264_21005at 63.927 kb on + strand, within CA264_21005at 63.927 kb on + strand, within CA264_21005at 63.928 kb on - strand, within CA264_21005at 63.928 kb on - strand, within CA264_21005at 63.928 kb on - strand, within CA264_21005at 63.928 kb on - strand, within CA264_21005at 63.955 kb on + strand, within CA264_21005at 63.975 kb on - strand, within CA264_21005at 64.015 kb on - strand, within CA264_21005at 64.015 kb on - strand, within CA264_21005at 64.054 kb on + strand, within CA264_21005at 64.140 kb on + strandat 64.140 kb on + strandat 64.141 kb on - strandat 64.218 kb on - strandat 64.222 kb on + strandat 64.226 kb on + strandat 64.265 kb on + strandat 64.277 kb on + strandat 64.278 kb on - strandat 64.278 kb on - strandat 64.292 kb on + strand, within CA264_21010at 64.297 kb on + strand, within CA264_21010at 64.298 kb on - strand, within CA264_21010at 64.423 kb on - strand, within CA264_21010at 64.440 kb on - strand, within CA264_21010at 64.440 kb on - strand, within CA264_21010at 64.482 kb on + strand, within CA264_21010at 64.482 kb on + strand, within CA264_21010at 64.482 kb on + strand, within CA264_21010at 64.483 kb on - strand, within CA264_21010at 64.483 kb on - strand, within CA264_21010at 64.493 kb on + strand, within CA264_21010at 64.569 kb on + strand, within CA264_21010at 64.569 kb on + strand, within CA264_21010at 64.647 kb on - strand, within CA264_21010at 64.653 kb on + strand, within CA264_21010at 64.766 kb on - strandat 64.803 kb on + strandat 64.831 kb on - strandat 64.876 kb on + strandat 64.877 kb on - strandat 64.923 kb on - strandat 64.946 kb on + strand, within CA264_21015at 64.946 kb on + strand, within CA264_21015at 64.978 kb on + strand, within CA264_21015at 64.979 kb on - strand, within CA264_21015at 64.979 kb on - strand, within CA264_21015at 64.979 kb on - strand, within CA264_21015at 65.016 kb on + strand, within CA264_21015at 65.061 kb on + strand, within CA264_21015at 65.061 kb on + strand, within CA264_21015at 65.062 kb on - strand, within CA264_21015at 65.083 kb on + strand, within CA264_21015at 65.083 kb on + strand, within CA264_21015at 65.084 kb on - strand, within CA264_21015at 65.148 kb on + strand, within CA264_21015

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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62,288 + CA264_20995 0.59 -0.1
62,303 + CA264_20995 0.61 -0.2
62,304 - CA264_20995 0.62 -0.5
62,307 + +2.1
62,308 - CA264_20995 0.62 -1.5
62,308 - CA264_20995 0.62 -2.6
62,422 - CA264_20995 0.79 -0.1
62,542 - +0.4
62,542 - -0.3
62,564 + -2.4
62,576 + +0.3
62,588 - -0.3
62,588 - +0.0
62,593 + -1.1
62,623 + -0.3
62,683 - CA264_21000 0.14 +0.1
62,683 - CA264_21000 0.14 -1.1
62,683 - CA264_21000 0.14 +1.4
62,742 - CA264_21000 0.23 +1.1
62,760 + CA264_21000 0.27 +0.4
62,784 - CA264_21000 0.30 +0.4
62,805 - CA264_21000 0.34 +2.1
62,805 - CA264_21000 0.34 -1.7
62,861 - CA264_21000 0.43 +0.1
62,869 + CA264_21000 0.45 -0.2
62,870 - CA264_21000 0.45 +2.1
62,870 - CA264_21000 0.45 -0.6
62,871 + CA264_21000 0.45 +0.4
62,931 + CA264_21000 0.55 +0.1
63,015 - CA264_21000 0.69 -0.4
63,060 - CA264_21000 0.77 +0.3
63,066 - CA264_21000 0.78 +1.1
63,066 - CA264_21000 0.78 +0.5
63,078 + CA264_21000 0.80 +0.2
63,117 + CA264_21000 0.86 -0.1
63,117 + CA264_21000 0.86 +0.5
63,117 + CA264_21000 0.86 +0.8
63,118 - CA264_21000 0.86 -0.9
63,118 - CA264_21000 0.86 -0.1
63,131 + CA264_21000 0.88 -0.9
63,222 + +0.1
63,222 + -0.3
63,222 + +0.1
63,222 + +0.8
63,223 - -0.3
63,263 + -0.3
63,263 + +0.3
63,264 - +0.4
63,264 - +0.4
63,264 - +0.1
63,329 - CA264_21005 0.12 -0.5
63,347 - CA264_21005 0.14 -0.6
63,347 - CA264_21005 0.14 +1.1
63,439 - CA264_21005 0.23 +2.1
63,493 + CA264_21005 0.29 -1.4
63,494 - CA264_21005 0.29 -0.7
63,506 + CA264_21005 0.30 -1.3
63,680 - CA264_21005 0.48 -0.9
63,682 + CA264_21005 0.48 +0.4
63,728 + CA264_21005 0.53 +1.1
63,728 + CA264_21005 0.53 -0.4
63,766 + CA264_21005 0.56 +0.5
63,766 + CA264_21005 0.56 -0.5
63,767 - CA264_21005 0.56 +0.1
63,767 - CA264_21005 0.56 +0.1
63,767 - CA264_21005 0.56 +1.5
63,772 - CA264_21005 0.57 +0.3
63,772 - CA264_21005 0.57 -0.1
63,775 + CA264_21005 0.57 -0.0
63,837 + CA264_21005 0.63 -0.5
63,920 - CA264_21005 0.72 -1.3
63,927 + CA264_21005 0.72 -0.3
63,927 + CA264_21005 0.72 -1.5
63,927 + CA264_21005 0.72 -0.5
63,928 - CA264_21005 0.73 -0.9
63,928 - CA264_21005 0.73 -2.1
63,928 - CA264_21005 0.73 +0.2
63,928 - CA264_21005 0.73 -0.4
63,955 + CA264_21005 0.75 +0.4
63,975 - CA264_21005 0.77 +0.6
64,015 - CA264_21005 0.81 -0.2
64,015 - CA264_21005 0.81 +0.4
64,054 + CA264_21005 0.85 -0.3
64,140 + -0.2
64,140 + -0.1
64,141 - +1.6
64,218 - -0.1
64,222 + -1.9
64,226 + +0.6
64,265 + -0.2
64,277 + -0.1
64,278 - +1.1
64,278 - +1.1
64,292 + CA264_21010 0.12 -0.2
64,297 + CA264_21010 0.13 +0.3
64,298 - CA264_21010 0.13 +0.9
64,423 - CA264_21010 0.34 +0.6
64,440 - CA264_21010 0.36 +0.4
64,440 - CA264_21010 0.36 -0.2
64,482 + CA264_21010 0.43 +1.1
64,482 + CA264_21010 0.43 -0.0
64,482 + CA264_21010 0.43 +1.3
64,483 - CA264_21010 0.44 -0.7
64,483 - CA264_21010 0.44 -0.9
64,493 + CA264_21010 0.45 -0.3
64,569 + CA264_21010 0.58 -0.1
64,569 + CA264_21010 0.58 +0.8
64,647 - CA264_21010 0.70 +0.4
64,653 + CA264_21010 0.71 +1.1
64,766 - +0.3
64,803 + +1.2
64,831 - -0.1
64,876 + +0.1
64,877 - +0.1
64,923 - -0.5
64,946 + CA264_21015 0.12 +0.1
64,946 + CA264_21015 0.12 +0.3
64,978 + CA264_21015 0.24 +0.1
64,979 - CA264_21015 0.24 -0.7
64,979 - CA264_21015 0.24 -1.2
64,979 - CA264_21015 0.24 -0.3
65,016 + CA264_21015 0.37 +0.8
65,061 + CA264_21015 0.53 +0.2
65,061 + CA264_21015 0.53 +2.1
65,062 - CA264_21015 0.54 +0.6
65,083 + CA264_21015 0.61 +0.1
65,083 + CA264_21015 0.61 +0.2
65,084 - CA264_21015 0.62 -0.4
65,148 + CA264_21015 0.85 +0.0

Or see this region's nucleotide sequence