Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20855

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20845 and CA264_20850 are separated by 47 nucleotidesCA264_20850 and CA264_20855 are separated by 21 nucleotidesCA264_20855 and CA264_20860 are separated by 325 nucleotides CA264_20845: CA264_20845 - hypothetical protein, at 29,525 to 29,764 _20845 CA264_20850: CA264_20850 - DsbA family protein, at 29,812 to 30,618 _20850 CA264_20855: CA264_20855 - manganese catalase, at 30,640 to 31,584 _20855 CA264_20860: CA264_20860 - site-specific DNA-methyltransferase, at 31,910 to 33,493 _20860 Position (kb) 30 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 29.679 kb on - strand, within CA264_20845at 29.803 kb on - strandat 29.883 kb on - strandat 29.910 kb on + strand, within CA264_20850at 29.918 kb on - strand, within CA264_20850at 29.948 kb on - strand, within CA264_20850at 29.970 kb on - strand, within CA264_20850at 30.024 kb on + strand, within CA264_20850at 30.025 kb on - strand, within CA264_20850at 30.067 kb on + strand, within CA264_20850at 30.074 kb on - strand, within CA264_20850at 30.127 kb on + strand, within CA264_20850at 30.128 kb on - strand, within CA264_20850at 30.218 kb on - strand, within CA264_20850at 30.243 kb on - strand, within CA264_20850at 30.243 kb on - strand, within CA264_20850at 30.303 kb on - strand, within CA264_20850at 30.361 kb on - strand, within CA264_20850at 30.361 kb on - strand, within CA264_20850at 30.417 kb on + strand, within CA264_20850at 30.417 kb on + strand, within CA264_20850at 30.418 kb on - strand, within CA264_20850at 30.429 kb on - strand, within CA264_20850at 30.447 kb on + strand, within CA264_20850at 30.555 kb on - strandat 30.558 kb on - strandat 30.558 kb on - strandat 30.562 kb on + strandat 30.563 kb on - strandat 30.595 kb on + strandat 30.595 kb on + strandat 30.621 kb on + strandat 30.621 kb on + strandat 30.621 kb on + strandat 30.622 kb on - strandat 30.622 kb on - strandat 30.628 kb on + strandat 30.628 kb on + strandat 30.641 kb on + strandat 30.798 kb on + strand, within CA264_20855at 30.834 kb on - strand, within CA264_20855at 30.851 kb on - strand, within CA264_20855at 30.914 kb on + strand, within CA264_20855at 30.914 kb on + strand, within CA264_20855at 30.926 kb on + strand, within CA264_20855at 30.971 kb on - strand, within CA264_20855at 30.972 kb on + strand, within CA264_20855at 30.972 kb on + strand, within CA264_20855at 30.972 kb on + strand, within CA264_20855at 30.973 kb on - strand, within CA264_20855at 31.045 kb on + strand, within CA264_20855at 31.050 kb on - strand, within CA264_20855at 31.050 kb on - strand, within CA264_20855at 31.076 kb on + strand, within CA264_20855at 31.077 kb on - strand, within CA264_20855at 31.083 kb on - strand, within CA264_20855at 31.117 kb on - strand, within CA264_20855at 31.117 kb on - strand, within CA264_20855at 31.157 kb on + strand, within CA264_20855at 31.157 kb on + strand, within CA264_20855at 31.157 kb on + strand, within CA264_20855at 31.157 kb on + strand, within CA264_20855at 31.158 kb on - strand, within CA264_20855at 31.415 kb on + strand, within CA264_20855at 31.577 kb on + strandat 31.717 kb on + strandat 31.743 kb on - strandat 31.743 kb on - strandat 31.745 kb on - strandat 31.750 kb on - strandat 31.823 kb on + strandat 31.882 kb on + strandat 31.915 kb on + strandat 31.944 kb on + strandat 31.991 kb on + strandat 31.991 kb on + strandat 31.994 kb on - strandat 32.047 kb on - strandat 32.114 kb on + strand, within CA264_20860at 32.130 kb on - strand, within CA264_20860at 32.169 kb on + strand, within CA264_20860at 32.184 kb on + strand, within CA264_20860at 32.254 kb on + strand, within CA264_20860at 32.261 kb on + strand, within CA264_20860at 32.330 kb on - strand, within CA264_20860at 32.330 kb on - strand, within CA264_20860at 32.356 kb on - strand, within CA264_20860at 32.389 kb on + strand, within CA264_20860at 32.393 kb on - strand, within CA264_20860at 32.400 kb on + strand, within CA264_20860at 32.401 kb on - strand, within CA264_20860at 32.459 kb on + strand, within CA264_20860at 32.460 kb on - strand, within CA264_20860at 32.460 kb on - strand, within CA264_20860at 32.462 kb on - strand, within CA264_20860at 32.462 kb on - strand, within CA264_20860at 32.462 kb on - strand, within CA264_20860at 32.472 kb on - strand, within CA264_20860at 32.525 kb on - strand, within CA264_20860at 32.525 kb on - strand, within CA264_20860at 32.534 kb on + strand, within CA264_20860

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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29,679 - CA264_20845 0.64 -0.7
29,803 - -0.0
29,883 - +0.1
29,910 + CA264_20850 0.12 +0.3
29,918 - CA264_20850 0.13 +2.1
29,948 - CA264_20850 0.17 -0.3
29,970 - CA264_20850 0.20 -0.5
30,024 + CA264_20850 0.26 +1.5
30,025 - CA264_20850 0.26 -2.7
30,067 + CA264_20850 0.32 +1.5
30,074 - CA264_20850 0.32 -0.2
30,127 + CA264_20850 0.39 +0.5
30,128 - CA264_20850 0.39 -0.3
30,218 - CA264_20850 0.50 -0.9
30,243 - CA264_20850 0.53 -0.8
30,243 - CA264_20850 0.53 -0.6
30,303 - CA264_20850 0.61 +0.7
30,361 - CA264_20850 0.68 -1.9
30,361 - CA264_20850 0.68 +0.0
30,417 + CA264_20850 0.75 -0.7
30,417 + CA264_20850 0.75 -1.5
30,418 - CA264_20850 0.75 +0.3
30,429 - CA264_20850 0.76 +0.3
30,447 + CA264_20850 0.79 -1.7
30,555 - +0.9
30,558 - +0.1
30,558 - +0.2
30,562 + +0.1
30,563 - -0.9
30,595 + -1.2
30,595 + -2.3
30,621 + -0.9
30,621 + -1.7
30,621 + +1.1
30,622 - -0.6
30,622 - +0.1
30,628 + -1.4
30,628 + +1.1
30,641 + -1.6
30,798 + CA264_20855 0.17 -2.6
30,834 - CA264_20855 0.21 -0.5
30,851 - CA264_20855 0.22 +0.1
30,914 + CA264_20855 0.29 -2.5
30,914 + CA264_20855 0.29 -3.3
30,926 + CA264_20855 0.30 -2.6
30,971 - CA264_20855 0.35 +0.1
30,972 + CA264_20855 0.35 -1.9
30,972 + CA264_20855 0.35 -2.3
30,972 + CA264_20855 0.35 -3.0
30,973 - CA264_20855 0.35 -0.6
31,045 + CA264_20855 0.43 -1.8
31,050 - CA264_20855 0.43 -1.5
31,050 - CA264_20855 0.43 -0.8
31,076 + CA264_20855 0.46 +0.1
31,077 - CA264_20855 0.46 -0.2
31,083 - CA264_20855 0.47 -1.0
31,117 - CA264_20855 0.50 +1.1
31,117 - CA264_20855 0.50 -0.5
31,157 + CA264_20855 0.55 -1.5
31,157 + CA264_20855 0.55 -1.7
31,157 + CA264_20855 0.55 -2.4
31,157 + CA264_20855 0.55 -0.5
31,158 - CA264_20855 0.55 -1.5
31,415 + CA264_20855 0.82 -2.5
31,577 + -2.9
31,717 + -3.7
31,743 - -0.9
31,743 - -1.9
31,745 - +0.1
31,750 - -1.8
31,823 + -1.5
31,882 + -1.7
31,915 + -3.3
31,944 + -3.4
31,991 + -2.8
31,991 + -3.5
31,994 - +0.5
32,047 - -2.5
32,114 + CA264_20860 0.13 -3.1
32,130 - CA264_20860 0.14 -0.5
32,169 + CA264_20860 0.16 +1.1
32,184 + CA264_20860 0.17 -2.2
32,254 + CA264_20860 0.22 -0.3
32,261 + CA264_20860 0.22 -1.9
32,330 - CA264_20860 0.27 -0.3
32,330 - CA264_20860 0.27 -2.1
32,356 - CA264_20860 0.28 -2.4
32,389 + CA264_20860 0.30 -2.3
32,393 - CA264_20860 0.30 -1.5
32,400 + CA264_20860 0.31 -3.6
32,401 - CA264_20860 0.31 -3.1
32,459 + CA264_20860 0.35 -2.4
32,460 - CA264_20860 0.35 -1.5
32,460 - CA264_20860 0.35 -3.7
32,462 - CA264_20860 0.35 +0.6
32,462 - CA264_20860 0.35 -0.9
32,462 - CA264_20860 0.35 -0.9
32,472 - CA264_20860 0.35 +0.7
32,525 - CA264_20860 0.39 +0.1
32,525 - CA264_20860 0.39 -1.8
32,534 + CA264_20860 0.39 -2.2

Or see this region's nucleotide sequence