Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20150 and CA264_20155 are separated by 312 nucleotides CA264_20155 and CA264_20160 are separated by 265 nucleotides
CA264_20150: CA264_20150 - hypothetical protein, at 4,647,982 to 4,648,863
_20150
CA264_20155: CA264_20155 - recombinase XerD, at 4,649,176 to 4,650,498
_20155
CA264_20160: CA264_20160 - acriflavin resistance protein, at 4,650,764 to 4,653,838
_20160
Position (kb)
4649
4650
4651 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4648.178 kb on - strand, within CA264_20150 at 4648.201 kb on + strand, within CA264_20150 at 4648.202 kb on - strand, within CA264_20150 at 4648.209 kb on - strand, within CA264_20150 at 4648.209 kb on - strand, within CA264_20150 at 4648.209 kb on - strand, within CA264_20150 at 4648.210 kb on + strand, within CA264_20150 at 4648.210 kb on + strand, within CA264_20150 at 4648.210 kb on + strand, within CA264_20150 at 4648.210 kb on + strand, within CA264_20150 at 4648.211 kb on - strand, within CA264_20150 at 4648.211 kb on - strand, within CA264_20150 at 4648.211 kb on - strand, within CA264_20150 at 4648.214 kb on + strand, within CA264_20150 at 4648.214 kb on + strand, within CA264_20150 at 4648.214 kb on + strand, within CA264_20150 at 4648.214 kb on + strand, within CA264_20150 at 4648.214 kb on + strand, within CA264_20150 at 4648.214 kb on + strand, within CA264_20150 at 4648.214 kb on + strand, within CA264_20150 at 4648.215 kb on - strand, within CA264_20150 at 4648.241 kb on - strand, within CA264_20150 at 4648.262 kb on + strand, within CA264_20150 at 4648.262 kb on + strand, within CA264_20150 at 4648.263 kb on - strand, within CA264_20150 at 4648.263 kb on - strand, within CA264_20150 at 4648.265 kb on + strand, within CA264_20150 at 4648.265 kb on + strand, within CA264_20150 at 4648.319 kb on + strand, within CA264_20150 at 4648.352 kb on - strand, within CA264_20150 at 4648.361 kb on - strand, within CA264_20150 at 4648.387 kb on - strand, within CA264_20150 at 4648.387 kb on - strand, within CA264_20150 at 4648.506 kb on + strand, within CA264_20150 at 4648.575 kb on + strand, within CA264_20150 at 4648.585 kb on + strand, within CA264_20150 at 4648.605 kb on + strand, within CA264_20150 at 4648.628 kb on - strand, within CA264_20150 at 4648.662 kb on + strand, within CA264_20150 at 4648.671 kb on + strand, within CA264_20150 at 4648.717 kb on - strand, within CA264_20150 at 4648.719 kb on + strand, within CA264_20150 at 4648.726 kb on + strand, within CA264_20150 at 4648.748 kb on - strand, within CA264_20150 at 4648.748 kb on - strand, within CA264_20150 at 4648.788 kb on - strand at 4648.807 kb on + strand at 4648.867 kb on + strand at 4648.868 kb on - strand at 4648.868 kb on - strand at 4648.883 kb on + strand at 4648.883 kb on + strand at 4648.923 kb on + strand at 4648.945 kb on + strand at 4649.038 kb on - strand at 4649.073 kb on + strand at 4649.113 kb on - strand at 4649.155 kb on - strand at 4649.158 kb on + strand at 4649.190 kb on + strand at 4649.190 kb on + strand at 4649.257 kb on - strand at 4649.274 kb on + strand at 4649.274 kb on + strand at 4649.274 kb on + strand at 4649.275 kb on - strand at 4649.278 kb on + strand at 4649.400 kb on + strand, within CA264_20155 at 4649.545 kb on + strand, within CA264_20155 at 4649.546 kb on - strand, within CA264_20155 at 4649.605 kb on - strand, within CA264_20155 at 4649.649 kb on - strand, within CA264_20155 at 4649.675 kb on - strand, within CA264_20155 at 4649.675 kb on - strand, within CA264_20155 at 4649.686 kb on - strand, within CA264_20155 at 4649.686 kb on - strand, within CA264_20155 at 4649.686 kb on - strand, within CA264_20155 at 4649.739 kb on + strand, within CA264_20155 at 4649.758 kb on + strand, within CA264_20155 at 4649.759 kb on - strand, within CA264_20155 at 4649.783 kb on - strand, within CA264_20155 at 4649.793 kb on + strand, within CA264_20155 at 4649.793 kb on + strand, within CA264_20155 at 4649.796 kb on - strand, within CA264_20155 at 4649.999 kb on + strand, within CA264_20155 at 4650.000 kb on - strand, within CA264_20155 at 4650.045 kb on + strand, within CA264_20155 at 4650.084 kb on + strand, within CA264_20155 at 4650.108 kb on + strand, within CA264_20155 at 4650.109 kb on - strand, within CA264_20155 at 4650.154 kb on + strand, within CA264_20155 at 4650.155 kb on - strand, within CA264_20155 at 4650.155 kb on - strand, within CA264_20155 at 4650.155 kb on - strand, within CA264_20155 at 4650.156 kb on + strand, within CA264_20155 at 4650.166 kb on + strand, within CA264_20155 at 4650.167 kb on - strand, within CA264_20155 at 4650.167 kb on - strand, within CA264_20155 at 4650.242 kb on + strand, within CA264_20155 at 4650.243 kb on - strand, within CA264_20155 at 4650.254 kb on + strand, within CA264_20155 at 4650.254 kb on + strand, within CA264_20155 at 4650.255 kb on - strand, within CA264_20155 at 4650.255 kb on - strand, within CA264_20155 at 4650.293 kb on + strand, within CA264_20155 at 4650.297 kb on + strand, within CA264_20155 at 4650.298 kb on - strand, within CA264_20155 at 4650.351 kb on + strand, within CA264_20155 at 4650.351 kb on + strand, within CA264_20155 at 4650.352 kb on - strand, within CA264_20155 at 4650.353 kb on + strand, within CA264_20155 at 4650.353 kb on + strand, within CA264_20155 at 4650.483 kb on + strand at 4650.484 kb on - strand at 4650.487 kb on - strand at 4650.494 kb on + strand at 4650.495 kb on - strand at 4650.495 kb on - strand at 4650.497 kb on - strand at 4650.515 kb on + strand at 4650.516 kb on - strand at 4650.516 kb on - strand at 4650.535 kb on - strand at 4650.547 kb on + strand at 4650.560 kb on + strand at 4650.574 kb on - strand at 4650.574 kb on - strand at 4650.574 kb on - strand at 4650.612 kb on + strand at 4650.653 kb on - strand at 4650.653 kb on - strand at 4650.802 kb on - strand at 4650.827 kb on - strand at 4651.082 kb on + strand, within CA264_20160 at 4651.089 kb on - strand, within CA264_20160 at 4651.210 kb on - strand, within CA264_20160 at 4651.210 kb on - strand, within CA264_20160 at 4651.218 kb on + strand, within CA264_20160 at 4651.218 kb on + strand, within CA264_20160 at 4651.218 kb on + strand, within CA264_20160 at 4651.219 kb on - strand, within CA264_20160 at 4651.249 kb on + strand, within CA264_20160 at 4651.270 kb on + strand, within CA264_20160 at 4651.461 kb on - strand, within CA264_20160
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 4,648,178 - CA264_20150 0.22 -1.1 4,648,201 + CA264_20150 0.25 +1.0 4,648,202 - CA264_20150 0.25 -0.5 4,648,209 - CA264_20150 0.26 +1.6 4,648,209 - CA264_20150 0.26 -0.2 4,648,209 - CA264_20150 0.26 -0.4 4,648,210 + CA264_20150 0.26 -1.7 4,648,210 + CA264_20150 0.26 +1.2 4,648,210 + CA264_20150 0.26 +0.2 4,648,210 + CA264_20150 0.26 -0.1 4,648,211 - CA264_20150 0.26 -1.1 4,648,211 - CA264_20150 0.26 +0.2 4,648,211 - CA264_20150 0.26 +1.5 4,648,214 + CA264_20150 0.26 -0.2 4,648,214 + CA264_20150 0.26 +1.2 4,648,214 + CA264_20150 0.26 +0.6 4,648,214 + CA264_20150 0.26 +1.8 4,648,214 + CA264_20150 0.26 -0.6 4,648,214 + CA264_20150 0.26 -0.7 4,648,214 + CA264_20150 0.26 +0.0 4,648,215 - CA264_20150 0.26 -0.8 4,648,241 - CA264_20150 0.29 +0.2 4,648,262 + CA264_20150 0.32 -0.6 4,648,262 + CA264_20150 0.32 -0.0 4,648,263 - CA264_20150 0.32 +0.3 4,648,263 - CA264_20150 0.32 -1.2 4,648,265 + CA264_20150 0.32 +0.5 4,648,265 + CA264_20150 0.32 -0.4 4,648,319 + CA264_20150 0.38 +0.0 4,648,352 - CA264_20150 0.42 -1.1 4,648,361 - CA264_20150 0.43 +0.2 4,648,387 - CA264_20150 0.46 -1.9 4,648,387 - CA264_20150 0.46 +0.7 4,648,506 + CA264_20150 0.59 -1.8 4,648,575 + CA264_20150 0.67 -1.2 4,648,585 + CA264_20150 0.68 +0.1 4,648,605 + CA264_20150 0.71 +0.9 4,648,628 - CA264_20150 0.73 -0.3 4,648,662 + CA264_20150 0.77 +0.0 4,648,671 + CA264_20150 0.78 +0.0 4,648,717 - CA264_20150 0.83 -0.8 4,648,719 + CA264_20150 0.84 -1.9 4,648,726 + CA264_20150 0.84 -0.0 4,648,748 - CA264_20150 0.87 -0.9 4,648,748 - CA264_20150 0.87 -1.6 4,648,788 - +0.0 4,648,807 + +0.0 4,648,867 + -1.8 4,648,868 - -1.8 4,648,868 - +0.9 4,648,883 + +1.2 4,648,883 + -0.8 4,648,923 + +0.1 4,648,945 + +1.8 4,649,038 - +0.0 4,649,073 + +1.4 4,649,113 - -0.2 4,649,155 - -2.6 4,649,158 + -0.0 4,649,190 + +1.8 4,649,190 + +0.2 4,649,257 - -1.0 4,649,274 + -0.7 4,649,274 + +0.3 4,649,274 + +0.1 4,649,275 - +0.5 4,649,278 + +0.2 4,649,400 + CA264_20155 0.17 +1.0 4,649,545 + CA264_20155 0.28 +2.2 4,649,546 - CA264_20155 0.28 +1.2 4,649,605 - CA264_20155 0.32 -0.3 4,649,649 - CA264_20155 0.36 +0.1 4,649,675 - CA264_20155 0.38 +2.0 4,649,675 - CA264_20155 0.38 +2.6 4,649,686 - CA264_20155 0.39 +1.2 4,649,686 - CA264_20155 0.39 +0.2 4,649,686 - CA264_20155 0.39 +0.2 4,649,739 + CA264_20155 0.43 +0.9 4,649,758 + CA264_20155 0.44 -0.1 4,649,759 - CA264_20155 0.44 -0.4 4,649,783 - CA264_20155 0.46 +0.9 4,649,793 + CA264_20155 0.47 +0.1 4,649,793 + CA264_20155 0.47 +1.2 4,649,796 - CA264_20155 0.47 -0.5 4,649,999 + CA264_20155 0.62 +1.2 4,650,000 - CA264_20155 0.62 -0.3 4,650,045 + CA264_20155 0.66 +0.2 4,650,084 + CA264_20155 0.69 -0.8 4,650,108 + CA264_20155 0.70 -0.9 4,650,109 - CA264_20155 0.71 -2.6 4,650,154 + CA264_20155 0.74 +2.2 4,650,155 - CA264_20155 0.74 -0.5 4,650,155 - CA264_20155 0.74 +0.0 4,650,155 - CA264_20155 0.74 -0.1 4,650,156 + CA264_20155 0.74 -1.1 4,650,166 + CA264_20155 0.75 -0.4 4,650,167 - CA264_20155 0.75 +1.2 4,650,167 - CA264_20155 0.75 +0.8 4,650,242 + CA264_20155 0.81 -1.6 4,650,243 - CA264_20155 0.81 +0.4 4,650,254 + CA264_20155 0.81 +1.6 4,650,254 + CA264_20155 0.81 +1.2 4,650,255 - CA264_20155 0.82 +0.2 4,650,255 - CA264_20155 0.82 -0.6 4,650,293 + CA264_20155 0.84 +0.3 4,650,297 + CA264_20155 0.85 -0.8 4,650,298 - CA264_20155 0.85 +1.9 4,650,351 + CA264_20155 0.89 -1.0 4,650,351 + CA264_20155 0.89 -0.5 4,650,352 - CA264_20155 0.89 +0.0 4,650,353 + CA264_20155 0.89 +0.0 4,650,353 + CA264_20155 0.89 +1.7 4,650,483 + -0.1 4,650,484 - +1.3 4,650,487 - +0.0 4,650,494 + -0.5 4,650,495 - +0.5 4,650,495 - -0.0 4,650,497 - -2.5 4,650,515 + -0.6 4,650,516 - -0.3 4,650,516 - -1.0 4,650,535 - +0.5 4,650,547 + -0.4 4,650,560 + -1.0 4,650,574 - -1.3 4,650,574 - -0.8 4,650,574 - -0.2 4,650,612 + -0.4 4,650,653 - +0.2 4,650,653 - -0.7 4,650,802 - -0.5 4,650,827 - -1.1 4,651,082 + CA264_20160 0.10 -0.1 4,651,089 - CA264_20160 0.11 +0.4 4,651,210 - CA264_20160 0.15 -0.3 4,651,210 - CA264_20160 0.15 -1.1 4,651,218 + CA264_20160 0.15 +1.2 4,651,218 + CA264_20160 0.15 -0.1 4,651,218 + CA264_20160 0.15 +1.1 4,651,219 - CA264_20160 0.15 -0.8 4,651,249 + CA264_20160 0.16 -1.6 4,651,270 + CA264_20160 0.16 -0.1 4,651,461 - CA264_20160 0.23 -0.0
Or see this region's nucleotide sequence