Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18735

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_18725 and CA264_18730 are separated by 61 nucleotidesCA264_18730 and CA264_18735 are separated by 6 nucleotidesCA264_18735 and CA264_18740 overlap by 8 nucleotidesCA264_18740 and CA264_18745 are separated by 75 nucleotides CA264_18725: CA264_18725 - phosphate transport system regulatory protein PhoU, at 4,347,678 to 4,348,403 _18725 CA264_18730: CA264_18730 - phosphate ABC transporter ATP-binding protein, at 4,348,465 to 4,349,229 _18730 CA264_18735: CA264_18735 - phosphate ABC transporter, permease protein PstA, at 4,349,236 to 4,350,093 _18735 CA264_18740: CA264_18740 - phosphate ABC transporter permease subunit PstC, at 4,350,086 to 4,350,961 _18740 CA264_18745: CA264_18745 - protein sphX, at 4,351,037 to 4,352,032 _18745 Position (kb) 4349 4350 4351Strain fitness (log2 ratio) -2 -1 0 1 2at 4348.244 kb on - strand, within CA264_18725at 4348.334 kb on - strandat 4348.334 kb on - strandat 4348.380 kb on + strandat 4348.380 kb on + strandat 4348.392 kb on + strandat 4348.392 kb on + strandat 4348.393 kb on - strandat 4348.393 kb on - strandat 4348.405 kb on + strandat 4348.406 kb on - strandat 4348.406 kb on - strandat 4348.435 kb on + strandat 4348.436 kb on - strandat 4348.440 kb on + strandat 4348.482 kb on + strandat 4348.487 kb on + strandat 4348.575 kb on + strand, within CA264_18730at 4348.631 kb on + strand, within CA264_18730at 4348.649 kb on + strand, within CA264_18730at 4348.649 kb on + strand, within CA264_18730at 4348.649 kb on + strand, within CA264_18730at 4348.938 kb on + strand, within CA264_18730at 4349.050 kb on + strand, within CA264_18730at 4349.050 kb on + strand, within CA264_18730at 4349.050 kb on + strand, within CA264_18730at 4349.050 kb on + strand, within CA264_18730at 4349.152 kb on - strand, within CA264_18730at 4349.181 kb on - strandat 4349.232 kb on + strandat 4349.233 kb on - strandat 4349.233 kb on - strandat 4349.233 kb on - strandat 4349.269 kb on + strandat 4349.269 kb on + strandat 4349.273 kb on + strandat 4349.275 kb on + strandat 4349.276 kb on - strandat 4349.314 kb on + strandat 4349.315 kb on - strandat 4349.373 kb on + strand, within CA264_18735at 4349.508 kb on + strand, within CA264_18735at 4349.579 kb on + strand, within CA264_18735at 4349.668 kb on - strand, within CA264_18735at 4349.742 kb on + strand, within CA264_18735at 4349.743 kb on - strand, within CA264_18735at 4349.813 kb on + strand, within CA264_18735at 4349.813 kb on + strand, within CA264_18735at 4349.814 kb on - strand, within CA264_18735at 4349.905 kb on + strand, within CA264_18735at 4349.944 kb on - strand, within CA264_18735at 4350.022 kb on + strandat 4350.023 kb on - strandat 4350.023 kb on - strandat 4350.023 kb on - strandat 4350.024 kb on + strandat 4350.087 kb on + strandat 4350.094 kb on - strandat 4350.163 kb on + strandat 4350.163 kb on + strandat 4350.164 kb on - strandat 4350.164 kb on - strandat 4350.166 kb on + strandat 4350.167 kb on - strandat 4350.224 kb on + strand, within CA264_18740at 4350.225 kb on - strand, within CA264_18740at 4350.238 kb on - strand, within CA264_18740at 4350.347 kb on + strand, within CA264_18740at 4350.350 kb on - strand, within CA264_18740at 4350.506 kb on - strand, within CA264_18740at 4350.650 kb on + strand, within CA264_18740at 4350.650 kb on + strand, within CA264_18740at 4350.679 kb on - strand, within CA264_18740at 4350.690 kb on + strand, within CA264_18740at 4350.772 kb on + strand, within CA264_18740at 4350.859 kb on + strand, within CA264_18740at 4350.883 kb on + strandat 4350.902 kb on + strandat 4350.903 kb on - strandat 4350.911 kb on + strandat 4350.912 kb on - strandat 4350.953 kb on + strandat 4350.970 kb on - strandat 4351.035 kb on + strandat 4351.039 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
remove
4,348,244 - CA264_18725 0.78 +0.3
4,348,334 - +0.2
4,348,334 - -1.0
4,348,380 + -0.5
4,348,380 + +1.6
4,348,392 + +0.0
4,348,392 + -0.6
4,348,393 - -0.5
4,348,393 - -1.3
4,348,405 + +0.1
4,348,406 - -0.6
4,348,406 - -0.1
4,348,435 + +0.3
4,348,436 - -0.9
4,348,440 + +2.0
4,348,482 + -0.8
4,348,487 + +1.0
4,348,575 + CA264_18730 0.14 -0.2
4,348,631 + CA264_18730 0.22 -0.5
4,348,649 + CA264_18730 0.24 -2.0
4,348,649 + CA264_18730 0.24 +1.3
4,348,649 + CA264_18730 0.24 +0.6
4,348,938 + CA264_18730 0.62 -1.1
4,349,050 + CA264_18730 0.76 -1.2
4,349,050 + CA264_18730 0.76 -0.3
4,349,050 + CA264_18730 0.76 -1.7
4,349,050 + CA264_18730 0.76 +1.7
4,349,152 - CA264_18730 0.90 +0.3
4,349,181 - -0.7
4,349,232 + -0.4
4,349,233 - +0.9
4,349,233 - +1.1
4,349,233 - -1.7
4,349,269 + -2.3
4,349,269 + -0.4
4,349,273 + -0.5
4,349,275 + -0.1
4,349,276 - -0.4
4,349,314 + -0.3
4,349,315 - +0.0
4,349,373 + CA264_18735 0.16 -0.7
4,349,508 + CA264_18735 0.32 -0.6
4,349,579 + CA264_18735 0.40 -0.6
4,349,668 - CA264_18735 0.50 +0.3
4,349,742 + CA264_18735 0.59 -0.3
4,349,743 - CA264_18735 0.59 -1.5
4,349,813 + CA264_18735 0.67 -1.3
4,349,813 + CA264_18735 0.67 -1.5
4,349,814 - CA264_18735 0.67 -0.2
4,349,905 + CA264_18735 0.78 +0.6
4,349,944 - CA264_18735 0.83 +1.0
4,350,022 + -0.1
4,350,023 - +0.1
4,350,023 - -0.2
4,350,023 - +1.3
4,350,024 + -0.3
4,350,087 + -0.7
4,350,094 - -0.4
4,350,163 + -0.9
4,350,163 + -1.1
4,350,164 - -0.8
4,350,164 - +0.3
4,350,166 + +0.3
4,350,167 - -0.3
4,350,224 + CA264_18740 0.16 -0.3
4,350,225 - CA264_18740 0.16 -0.2
4,350,238 - CA264_18740 0.17 +2.3
4,350,347 + CA264_18740 0.30 +1.3
4,350,350 - CA264_18740 0.30 +0.6
4,350,506 - CA264_18740 0.48 +0.0
4,350,650 + CA264_18740 0.64 -1.7
4,350,650 + CA264_18740 0.64 -0.1
4,350,679 - CA264_18740 0.68 +0.3
4,350,690 + CA264_18740 0.69 -2.0
4,350,772 + CA264_18740 0.78 +0.0
4,350,859 + CA264_18740 0.88 +0.7
4,350,883 + -1.3
4,350,902 + -1.5
4,350,903 - +0.8
4,350,911 + +0.4
4,350,912 - -2.0
4,350,953 + +0.5
4,350,970 - -1.3
4,351,035 + -1.0
4,351,039 - -0.2

Or see this region's nucleotide sequence