Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18655

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18645 and CA264_18650 are separated by 69 nucleotidesCA264_18650 and CA264_18655 are separated by 169 nucleotidesCA264_18655 and CA264_18660 are separated by 206 nucleotides CA264_18645: CA264_18645 - haloacid dehalogenase, at 4,334,850 to 4,335,674 _18645 CA264_18650: CA264_18650 - thioesterase, at 4,335,744 to 4,336,178 _18650 CA264_18655: CA264_18655 - transcriptional repressor, at 4,336,348 to 4,336,770 _18655 CA264_18660: CA264_18660 - T9SS C-terminal target domain-containing protein, at 4,336,977 to 4,337,720 _18660 Position (kb) 4336 4337Strain fitness (log2 ratio) -1 0 1 2at 4335.408 kb on + strand, within CA264_18645at 4335.409 kb on - strand, within CA264_18645at 4335.409 kb on - strand, within CA264_18645at 4335.466 kb on + strand, within CA264_18645at 4335.467 kb on - strand, within CA264_18645at 4335.467 kb on - strand, within CA264_18645at 4335.476 kb on + strand, within CA264_18645at 4335.580 kb on + strand, within CA264_18645at 4335.646 kb on - strandat 4335.646 kb on - strandat 4335.646 kb on - strandat 4335.712 kb on + strandat 4335.713 kb on - strandat 4335.718 kb on + strandat 4335.718 kb on + strandat 4335.719 kb on - strandat 4335.736 kb on - strandat 4335.825 kb on + strand, within CA264_18650at 4335.838 kb on - strand, within CA264_18650at 4335.841 kb on - strand, within CA264_18650at 4335.846 kb on - strand, within CA264_18650at 4335.919 kb on - strand, within CA264_18650at 4336.007 kb on + strand, within CA264_18650at 4336.008 kb on - strand, within CA264_18650at 4336.008 kb on - strand, within CA264_18650at 4336.057 kb on + strand, within CA264_18650at 4336.057 kb on + strand, within CA264_18650at 4336.057 kb on + strand, within CA264_18650at 4336.087 kb on + strand, within CA264_18650at 4336.087 kb on + strand, within CA264_18650at 4336.104 kb on - strand, within CA264_18650at 4336.179 kb on - strandat 4336.179 kb on - strandat 4336.314 kb on - strandat 4336.315 kb on + strandat 4336.316 kb on - strandat 4336.319 kb on + strandat 4336.320 kb on - strandat 4336.320 kb on - strandat 4336.322 kb on - strandat 4336.326 kb on - strandat 4336.330 kb on - strandat 4336.337 kb on + strandat 4336.441 kb on + strand, within CA264_18655at 4336.441 kb on + strand, within CA264_18655at 4336.442 kb on - strand, within CA264_18655at 4336.583 kb on - strand, within CA264_18655at 4336.617 kb on - strand, within CA264_18655at 4336.687 kb on - strand, within CA264_18655at 4336.739 kb on + strandat 4336.747 kb on + strandat 4336.808 kb on - strandat 4336.859 kb on - strandat 4336.859 kb on - strandat 4336.859 kb on - strandat 4336.860 kb on + strandat 4336.860 kb on + strandat 4336.908 kb on - strandat 4336.942 kb on + strandat 4336.942 kb on + strandat 4336.943 kb on - strandat 4336.944 kb on + strandat 4336.990 kb on + strandat 4336.990 kb on + strandat 4336.990 kb on + strandat 4336.990 kb on + strandat 4336.990 kb on + strandat 4337.002 kb on + strandat 4337.010 kb on - strandat 4337.010 kb on - strandat 4337.011 kb on + strandat 4337.118 kb on + strand, within CA264_18660at 4337.145 kb on + strand, within CA264_18660at 4337.146 kb on - strand, within CA264_18660at 4337.224 kb on - strand, within CA264_18660at 4337.265 kb on + strand, within CA264_18660at 4337.391 kb on - strand, within CA264_18660at 4337.391 kb on - strand, within CA264_18660at 4337.396 kb on - strand, within CA264_18660at 4337.506 kb on - strand, within CA264_18660at 4337.511 kb on - strand, within CA264_18660at 4337.605 kb on + strand, within CA264_18660at 4337.605 kb on + strand, within CA264_18660at 4337.647 kb on - strandat 4337.658 kb on - strandat 4337.661 kb on + strandat 4337.661 kb on + strandat 4337.661 kb on + strandat 4337.714 kb on - strandat 4337.733 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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4,335,408 + CA264_18645 0.68 +1.3
4,335,409 - CA264_18645 0.68 -1.2
4,335,409 - CA264_18645 0.68 -0.4
4,335,466 + CA264_18645 0.75 +1.0
4,335,467 - CA264_18645 0.75 +2.6
4,335,467 - CA264_18645 0.75 -0.3
4,335,476 + CA264_18645 0.76 -0.2
4,335,580 + CA264_18645 0.88 -1.3
4,335,646 - +0.3
4,335,646 - -0.5
4,335,646 - -1.7
4,335,712 + +0.9
4,335,713 - +1.7
4,335,718 + +0.9
4,335,718 + +0.2
4,335,719 - +0.5
4,335,736 - +0.6
4,335,825 + CA264_18650 0.19 -0.2
4,335,838 - CA264_18650 0.22 +0.3
4,335,841 - CA264_18650 0.22 -0.5
4,335,846 - CA264_18650 0.23 -0.3
4,335,919 - CA264_18650 0.40 -1.3
4,336,007 + CA264_18650 0.60 -0.3
4,336,008 - CA264_18650 0.61 +1.0
4,336,008 - CA264_18650 0.61 -0.4
4,336,057 + CA264_18650 0.72 +1.1
4,336,057 + CA264_18650 0.72 +0.0
4,336,057 + CA264_18650 0.72 +2.1
4,336,087 + CA264_18650 0.79 +0.2
4,336,087 + CA264_18650 0.79 +0.9
4,336,104 - CA264_18650 0.83 +0.3
4,336,179 - +0.7
4,336,179 - +0.2
4,336,314 - +0.3
4,336,315 + +1.2
4,336,316 - -1.0
4,336,319 + +0.1
4,336,320 - -0.2
4,336,320 - +1.9
4,336,322 - -0.9
4,336,326 - -0.7
4,336,330 - +0.1
4,336,337 + +0.3
4,336,441 + CA264_18655 0.22 +0.6
4,336,441 + CA264_18655 0.22 +0.2
4,336,442 - CA264_18655 0.22 +0.3
4,336,583 - CA264_18655 0.56 +0.3
4,336,617 - CA264_18655 0.64 -1.0
4,336,687 - CA264_18655 0.80 -1.3
4,336,739 + +0.3
4,336,747 + +0.1
4,336,808 - +1.1
4,336,859 - -0.0
4,336,859 - -1.0
4,336,859 - -0.3
4,336,860 + +0.3
4,336,860 + +0.1
4,336,908 - +0.1
4,336,942 + +1.0
4,336,942 + -0.3
4,336,943 - -0.2
4,336,944 + -0.3
4,336,990 + -0.5
4,336,990 + -1.1
4,336,990 + -0.2
4,336,990 + -0.0
4,336,990 + +0.5
4,337,002 + -0.3
4,337,010 - +0.1
4,337,010 - -0.3
4,337,011 + +1.2
4,337,118 + CA264_18660 0.19 -1.5
4,337,145 + CA264_18660 0.23 +1.3
4,337,146 - CA264_18660 0.23 -1.3
4,337,224 - CA264_18660 0.33 -0.3
4,337,265 + CA264_18660 0.39 -0.5
4,337,391 - CA264_18660 0.56 -0.2
4,337,391 - CA264_18660 0.56 -1.5
4,337,396 - CA264_18660 0.56 +0.5
4,337,506 - CA264_18660 0.71 -0.4
4,337,511 - CA264_18660 0.72 +0.6
4,337,605 + CA264_18660 0.84 -0.6
4,337,605 + CA264_18660 0.84 -0.1
4,337,647 - -0.4
4,337,658 - +0.2
4,337,661 + -0.5
4,337,661 + +0.2
4,337,661 + +1.3
4,337,714 - -0.2
4,337,733 - +0.1

Or see this region's nucleotide sequence