Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17175 and CA264_17180 are separated by 210 nucleotides CA264_17180 and CA264_17185 are separated by 341 nucleotides CA264_17185 and CA264_17190 are separated by 38 nucleotides CA264_17190 and CA264_17195 are separated by 7 nucleotides
CA264_17175: CA264_17175 - 23S rRNA (adenine(1618)-N(6))-methyltransferase, at 3,998,333 to 3,999,325
_17175
CA264_17180: CA264_17180 - hypothetical protein, at 3,999,536 to 3,999,976
_17180
CA264_17185: CA264_17185 - peptide-methionine (R)-S-oxide reductase, at 4,000,318 to 4,000,716
_17185
CA264_17190: CA264_17190 - methionine-R-sulfoxide reductase, at 4,000,755 to 4,001,078
_17190
CA264_17195: CA264_17195 - hypothetical protein, at 4,001,086 to 4,001,760
_17195
Position (kb)
4000
4001 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3999.529 kb on + strand at 3999.530 kb on - strand at 3999.530 kb on - strand at 3999.534 kb on + strand at 3999.537 kb on + strand at 3999.546 kb on + strand at 3999.546 kb on + strand at 3999.575 kb on - strand at 3999.575 kb on - strand at 3999.639 kb on + strand, within CA264_17180 at 3999.639 kb on + strand, within CA264_17180 at 3999.763 kb on - strand, within CA264_17180 at 3999.889 kb on + strand, within CA264_17180 at 3999.890 kb on - strand, within CA264_17180 at 3999.890 kb on - strand, within CA264_17180 at 3999.897 kb on - strand, within CA264_17180 at 3999.966 kb on + strand at 3999.989 kb on + strand at 3999.996 kb on + strand at 4000.126 kb on - strand at 4000.133 kb on + strand at 4000.134 kb on - strand at 4000.134 kb on - strand at 4000.191 kb on + strand at 4000.193 kb on + strand at 4000.194 kb on - strand at 4000.237 kb on + strand at 4000.290 kb on + strand at 4000.291 kb on - strand at 4000.291 kb on - strand at 4000.312 kb on + strand at 4000.347 kb on + strand at 4000.348 kb on - strand at 4000.378 kb on - strand, within CA264_17185 at 4000.444 kb on + strand, within CA264_17185 at 4000.444 kb on + strand, within CA264_17185 at 4000.445 kb on - strand, within CA264_17185 at 4000.487 kb on - strand, within CA264_17185 at 4000.653 kb on - strand, within CA264_17185 at 4000.653 kb on - strand, within CA264_17185 at 4000.749 kb on + strand at 4000.749 kb on + strand at 4000.750 kb on - strand at 4000.775 kb on - strand at 4000.809 kb on + strand, within CA264_17190 at 4001.026 kb on - strand, within CA264_17190 at 4001.030 kb on + strand, within CA264_17190 at 4001.031 kb on - strand, within CA264_17190 at 4001.076 kb on + strand at 4001.101 kb on - strand at 4001.245 kb on + strand, within CA264_17195 at 4001.315 kb on + strand, within CA264_17195 at 4001.330 kb on - strand, within CA264_17195 at 4001.360 kb on + strand, within CA264_17195 at 4001.373 kb on - strand, within CA264_17195 at 4001.594 kb on + strand, within CA264_17195 at 4001.595 kb on - strand, within CA264_17195 at 4001.637 kb on + strand, within CA264_17195 at 4001.638 kb on - strand, within CA264_17195 at 4001.638 kb on - strand, within CA264_17195 at 4001.638 kb on - strand, within CA264_17195 at 4001.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 3,999,529 + +1.7 3,999,530 - +0.1 3,999,530 - -0.3 3,999,534 + +0.8 3,999,537 + +1.4 3,999,546 + -0.0 3,999,546 + -0.7 3,999,575 - +1.4 3,999,575 - -1.2 3,999,639 + CA264_17180 0.23 -0.3 3,999,639 + CA264_17180 0.23 -0.1 3,999,763 - CA264_17180 0.51 -1.2 3,999,889 + CA264_17180 0.80 -1.5 3,999,890 - CA264_17180 0.80 -0.2 3,999,890 - CA264_17180 0.80 -0.2 3,999,897 - CA264_17180 0.82 +2.4 3,999,966 + -1.9 3,999,989 + -0.9 3,999,996 + -0.7 4,000,126 - -0.6 4,000,133 + -1.7 4,000,134 - -1.8 4,000,134 - -1.1 4,000,191 + +0.7 4,000,193 + -1.0 4,000,194 - -1.0 4,000,237 + -0.1 4,000,290 + -0.6 4,000,291 - +0.8 4,000,291 - +0.1 4,000,312 + -0.4 4,000,347 + -1.8 4,000,348 - +0.2 4,000,378 - CA264_17185 0.15 -0.3 4,000,444 + CA264_17185 0.32 -0.6 4,000,444 + CA264_17185 0.32 -0.8 4,000,445 - CA264_17185 0.32 -0.2 4,000,487 - CA264_17185 0.42 -0.7 4,000,653 - CA264_17185 0.84 -0.3 4,000,653 - CA264_17185 0.84 -1.8 4,000,749 + -0.2 4,000,749 + -0.4 4,000,750 - +0.5 4,000,775 - -0.0 4,000,809 + CA264_17190 0.17 -0.0 4,001,026 - CA264_17190 0.84 +0.7 4,001,030 + CA264_17190 0.85 -0.6 4,001,031 - CA264_17190 0.85 +1.1 4,001,076 + -0.9 4,001,101 - -0.6 4,001,245 + CA264_17195 0.24 -1.1 4,001,315 + CA264_17195 0.34 +0.1 4,001,330 - CA264_17195 0.36 -0.5 4,001,360 + CA264_17195 0.41 +0.3 4,001,373 - CA264_17195 0.43 -0.2 4,001,594 + CA264_17195 0.75 -1.4 4,001,595 - CA264_17195 0.75 +1.4 4,001,637 + CA264_17195 0.82 +1.0 4,001,638 - CA264_17195 0.82 -0.1 4,001,638 - CA264_17195 0.82 -0.8 4,001,638 - CA264_17195 0.82 +0.0 4,001,715 + +0.7
Or see this region's nucleotide sequence