Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17045

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17035 and CA264_17040 overlap by 1 nucleotidesCA264_17040 and CA264_17045 are separated by 27 nucleotidesCA264_17045 and CA264_17050 are separated by 191 nucleotides CA264_17035: CA264_17035 - ribose 5-phosphate isomerase B, at 3,964,379 to 3,964,816 _17035 CA264_17040: CA264_17040 - twin-arginine translocase subunit TatC, at 3,964,816 to 3,965,661 _17040 CA264_17045: CA264_17045 - serine hydroxymethyltransferase, at 3,965,689 to 3,966,963 _17045 CA264_17050: CA264_17050 - hypothetical protein, at 3,967,155 to 3,973,004 _17050 Position (kb) 3965 3966 3967Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3965.708 kb on + strandat 3965.728 kb on + strandat 3965.838 kb on + strand, within CA264_17045at 3965.839 kb on - strand, within CA264_17045at 3966.018 kb on + strand, within CA264_17045at 3966.018 kb on + strand, within CA264_17045at 3966.086 kb on + strand, within CA264_17045at 3966.310 kb on - strand, within CA264_17045at 3966.569 kb on + strand, within CA264_17045at 3966.673 kb on - strand, within CA264_17045at 3966.776 kb on - strand, within CA264_17045at 3966.776 kb on - strand, within CA264_17045at 3966.824 kb on + strand, within CA264_17045at 3966.946 kb on - strandat 3966.946 kb on - strandat 3966.952 kb on - strandat 3966.975 kb on - strandat 3966.998 kb on - strandat 3967.037 kb on + strandat 3967.138 kb on + strandat 3967.153 kb on + strandat 3967.153 kb on + strandat 3967.156 kb on + strandat 3967.157 kb on - strandat 3967.180 kb on + strandat 3967.182 kb on + strandat 3967.182 kb on + strandat 3967.182 kb on + strandat 3967.183 kb on - strandat 3967.213 kb on + strandat 3967.213 kb on + strandat 3967.213 kb on + strandat 3967.213 kb on + strandat 3967.214 kb on - strandat 3967.214 kb on - strandat 3967.214 kb on - strandat 3967.237 kb on + strandat 3967.251 kb on + strandat 3967.252 kb on - strandat 3967.278 kb on + strandat 3967.279 kb on - strandat 3967.279 kb on - strandat 3967.291 kb on + strandat 3967.291 kb on + strandat 3967.292 kb on - strandat 3967.292 kb on - strandat 3967.335 kb on - strandat 3967.335 kb on - strandat 3967.341 kb on + strandat 3967.342 kb on - strandat 3967.342 kb on - strandat 3967.355 kb on + strandat 3967.373 kb on - strandat 3967.373 kb on - strandat 3967.407 kb on + strandat 3967.437 kb on + strandat 3967.450 kb on + strandat 3967.451 kb on - strandat 3967.467 kb on + strandat 3967.468 kb on - strandat 3967.473 kb on + strandat 3967.492 kb on + strandat 3967.599 kb on + strandat 3967.740 kb on - strand, within CA264_17050at 3967.771 kb on - strand, within CA264_17050at 3967.781 kb on + strand, within CA264_17050at 3967.803 kb on + strand, within CA264_17050at 3967.803 kb on + strand, within CA264_17050at 3967.804 kb on - strand, within CA264_17050at 3967.807 kb on + strand, within CA264_17050at 3967.807 kb on + strand, within CA264_17050at 3967.807 kb on + strand, within CA264_17050at 3967.807 kb on + strand, within CA264_17050at 3967.921 kb on - strand, within CA264_17050

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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3,965,708 + -2.5
3,965,728 + -0.4
3,965,838 + CA264_17045 0.12 -0.7
3,965,839 - CA264_17045 0.12 -1.4
3,966,018 + CA264_17045 0.26 -1.0
3,966,018 + CA264_17045 0.26 -0.4
3,966,086 + CA264_17045 0.31 -0.3
3,966,310 - CA264_17045 0.49 -0.8
3,966,569 + CA264_17045 0.69 -0.8
3,966,673 - CA264_17045 0.77 -1.7
3,966,776 - CA264_17045 0.85 -0.8
3,966,776 - CA264_17045 0.85 -1.0
3,966,824 + CA264_17045 0.89 -2.5
3,966,946 - -0.5
3,966,946 - -0.6
3,966,952 - -4.7
3,966,975 - -0.3
3,966,998 - +0.0
3,967,037 + +0.6
3,967,138 + -1.1
3,967,153 + -0.1
3,967,153 + +2.3
3,967,156 + -1.3
3,967,157 - -0.3
3,967,180 + -1.7
3,967,182 + -0.5
3,967,182 + +0.5
3,967,182 + +2.4
3,967,183 - -0.7
3,967,213 + -2.1
3,967,213 + -0.3
3,967,213 + -0.6
3,967,213 + -1.1
3,967,214 - -0.7
3,967,214 - -1.8
3,967,214 - +0.6
3,967,237 + -0.5
3,967,251 + -0.2
3,967,252 - +2.4
3,967,278 + -0.2
3,967,279 - -1.3
3,967,279 - -0.7
3,967,291 + -0.9
3,967,291 + -1.6
3,967,292 - -0.6
3,967,292 - -0.5
3,967,335 - +0.1
3,967,335 - -3.2
3,967,341 + -0.1
3,967,342 - -1.2
3,967,342 - -0.1
3,967,355 + -1.5
3,967,373 - -1.8
3,967,373 - -2.3
3,967,407 + -0.5
3,967,437 + -1.3
3,967,450 + -0.9
3,967,451 - +0.7
3,967,467 + -0.4
3,967,468 - -1.6
3,967,473 + -0.8
3,967,492 + -0.3
3,967,599 + -0.5
3,967,740 - CA264_17050 0.10 +0.5
3,967,771 - CA264_17050 0.11 -0.2
3,967,781 + CA264_17050 0.11 +0.4
3,967,803 + CA264_17050 0.11 -1.0
3,967,803 + CA264_17050 0.11 -0.0
3,967,804 - CA264_17050 0.11 -0.2
3,967,807 + CA264_17050 0.11 -0.2
3,967,807 + CA264_17050 0.11 +0.1
3,967,807 + CA264_17050 0.11 -0.1
3,967,807 + CA264_17050 0.11 -1.1
3,967,921 - CA264_17050 0.13 +0.3

Or see this region's nucleotide sequence