Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16575 and CA264_16580 are separated by 154 nucleotides CA264_16580 and CA264_16585 are separated by 424 nucleotides CA264_16585 and CA264_16590 are separated by 194 nucleotides
CA264_16575: CA264_16575 - hypothetical protein, at 3,853,885 to 3,854,283
_16575
CA264_16580: CA264_16580 - aminoacyl-tRNA hydrolase, at 3,854,438 to 3,854,848
_16580
CA264_16585: CA264_16585 - hypothetical protein, at 3,855,273 to 3,855,653
_16585
CA264_16590: CA264_16590 - site-2 protease family protein, at 3,855,848 to 3,856,927
_16590
Position (kb)
3855
3856 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3854.297 kb on - strand at 3854.325 kb on - strand at 3854.336 kb on + strand at 3854.338 kb on + strand at 3854.339 kb on - strand at 3854.339 kb on - strand at 3854.374 kb on - strand at 3854.374 kb on - strand at 3854.374 kb on - strand at 3854.374 kb on - strand at 3854.574 kb on - strand, within CA264_16580 at 3854.755 kb on + strand, within CA264_16580 at 3854.755 kb on + strand, within CA264_16580 at 3854.755 kb on + strand, within CA264_16580 at 3854.755 kb on + strand, within CA264_16580 at 3854.756 kb on - strand, within CA264_16580 at 3854.849 kb on - strand at 3854.851 kb on - strand at 3854.851 kb on - strand at 3854.860 kb on + strand at 3854.862 kb on + strand at 3854.863 kb on - strand at 3854.912 kb on - strand at 3854.934 kb on + strand at 3854.936 kb on + strand at 3854.936 kb on + strand at 3854.936 kb on + strand at 3854.937 kb on - strand at 3854.998 kb on + strand at 3854.999 kb on - strand at 3855.037 kb on + strand at 3855.038 kb on - strand at 3855.049 kb on + strand at 3855.050 kb on - strand at 3855.106 kb on - strand at 3855.164 kb on - strand at 3855.164 kb on - strand at 3855.213 kb on - strand at 3855.215 kb on + strand at 3855.216 kb on - strand at 3855.217 kb on + strand at 3855.218 kb on - strand at 3855.218 kb on - strand at 3855.229 kb on + strand at 3855.254 kb on + strand at 3855.254 kb on + strand at 3855.254 kb on + strand at 3855.254 kb on + strand at 3855.255 kb on - strand at 3855.255 kb on - strand at 3855.255 kb on - strand at 3855.356 kb on + strand, within CA264_16585 at 3855.377 kb on + strand, within CA264_16585 at 3855.682 kb on - strand at 3855.759 kb on + strand at 3855.867 kb on + strand at 3855.868 kb on - strand at 3855.876 kb on + strand at 3855.885 kb on + strand at 3855.946 kb on - strand at 3856.271 kb on + strand, within CA264_16590 at 3856.369 kb on + strand, within CA264_16590 at 3856.441 kb on + strand, within CA264_16590 at 3856.577 kb on + strand, within CA264_16590 at 3856.578 kb on - strand, within CA264_16590 at 3856.578 kb on - strand, within CA264_16590 at 3856.651 kb on + strand, within CA264_16590
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 3,854,297 - +0.6 3,854,325 - -2.2 3,854,336 + +1.3 3,854,338 + -1.7 3,854,339 - -0.9 3,854,339 - +0.2 3,854,374 - +0.2 3,854,374 - +1.3 3,854,374 - +0.0 3,854,374 - -0.1 3,854,574 - CA264_16580 0.33 -0.2 3,854,755 + CA264_16580 0.77 -0.7 3,854,755 + CA264_16580 0.77 -0.5 3,854,755 + CA264_16580 0.77 +1.7 3,854,755 + CA264_16580 0.77 +0.3 3,854,756 - CA264_16580 0.77 -0.2 3,854,849 - -0.1 3,854,851 - -0.7 3,854,851 - -1.4 3,854,860 + -0.4 3,854,862 + -0.7 3,854,863 - +0.4 3,854,912 - -0.1 3,854,934 + -0.7 3,854,936 + -0.9 3,854,936 + +0.1 3,854,936 + -1.5 3,854,937 - -2.1 3,854,998 + -0.7 3,854,999 - -0.5 3,855,037 + -1.7 3,855,038 - -0.5 3,855,049 + -0.5 3,855,050 - +0.2 3,855,106 - +0.3 3,855,164 - +0.0 3,855,164 - +0.1 3,855,213 - -0.4 3,855,215 + +1.2 3,855,216 - +0.0 3,855,217 + +0.3 3,855,218 - -0.3 3,855,218 - +0.8 3,855,229 + +0.2 3,855,254 + -2.2 3,855,254 + -2.1 3,855,254 + +0.8 3,855,254 + -1.0 3,855,255 - +0.1 3,855,255 - -0.1 3,855,255 - +1.3 3,855,356 + CA264_16585 0.22 -0.7 3,855,377 + CA264_16585 0.27 +2.1 3,855,682 - -0.2 3,855,759 + -0.5 3,855,867 + +0.9 3,855,868 - +0.6 3,855,876 + -2.0 3,855,885 + -0.1 3,855,946 - +0.6 3,856,271 + CA264_16590 0.39 +1.3 3,856,369 + CA264_16590 0.48 +1.0 3,856,441 + CA264_16590 0.55 -2.0 3,856,577 + CA264_16590 0.68 +0.1 3,856,578 - CA264_16590 0.68 +2.6 3,856,578 - CA264_16590 0.68 +0.3 3,856,651 + CA264_16590 0.74 +0.6
Or see this region's nucleotide sequence