Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15300

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15290 and CA264_15295 are separated by 193 nucleotidesCA264_15295 and CA264_15300 are separated by 3 nucleotidesCA264_15300 and CA264_15305 are separated by 29 nucleotides CA264_15290: CA264_15290 - alpha/beta hydrolase, at 3,578,560 to 3,579,330 _15290 CA264_15295: CA264_15295 - SAM-dependent methyltransferase, at 3,579,524 to 3,580,240 _15295 CA264_15300: CA264_15300 - hypothetical protein, at 3,580,244 to 3,581,275 _15300 CA264_15305: CA264_15305 - hypothetical protein, at 3,581,305 to 3,582,339 _15305 Position (kb) 3580 3581 3582Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3579.293 kb on + strandat 3579.294 kb on + strandat 3579.294 kb on - strandat 3579.316 kb on - strandat 3579.329 kb on - strandat 3579.396 kb on + strandat 3579.424 kb on + strandat 3579.425 kb on - strandat 3579.436 kb on + strandat 3579.436 kb on + strandat 3579.436 kb on + strandat 3579.459 kb on - strandat 3579.467 kb on + strandat 3579.467 kb on + strandat 3579.468 kb on - strandat 3579.506 kb on + strandat 3579.506 kb on + strandat 3579.506 kb on + strandat 3579.507 kb on - strandat 3579.543 kb on + strandat 3579.544 kb on - strandat 3579.544 kb on - strandat 3579.590 kb on - strandat 3579.610 kb on + strand, within CA264_15295at 3579.610 kb on + strand, within CA264_15295at 3579.611 kb on - strand, within CA264_15295at 3579.630 kb on - strand, within CA264_15295at 3579.634 kb on + strand, within CA264_15295at 3579.635 kb on - strand, within CA264_15295at 3579.666 kb on - strand, within CA264_15295at 3579.666 kb on - strand, within CA264_15295at 3579.707 kb on - strand, within CA264_15295at 3579.733 kb on + strand, within CA264_15295at 3579.734 kb on - strand, within CA264_15295at 3579.747 kb on + strand, within CA264_15295at 3579.747 kb on + strand, within CA264_15295at 3579.877 kb on - strand, within CA264_15295at 3579.903 kb on + strand, within CA264_15295at 3579.903 kb on + strand, within CA264_15295at 3580.120 kb on + strand, within CA264_15295at 3580.120 kb on + strand, within CA264_15295at 3580.121 kb on - strand, within CA264_15295at 3580.121 kb on - strand, within CA264_15295at 3580.203 kb on + strandat 3580.203 kb on + strandat 3580.207 kb on + strandat 3580.207 kb on + strandat 3580.207 kb on + strandat 3580.208 kb on - strandat 3580.208 kb on - strandat 3580.208 kb on - strandat 3580.233 kb on - strandat 3580.234 kb on + strandat 3580.235 kb on - strandat 3580.245 kb on + strandat 3580.285 kb on + strandat 3580.302 kb on + strandat 3580.306 kb on + strandat 3580.328 kb on + strandat 3580.328 kb on + strandat 3580.328 kb on + strandat 3580.329 kb on - strandat 3580.329 kb on - strandat 3580.329 kb on - strandat 3580.329 kb on - strandat 3580.347 kb on - strandat 3580.413 kb on - strand, within CA264_15300at 3580.423 kb on + strand, within CA264_15300at 3580.424 kb on - strand, within CA264_15300at 3580.424 kb on - strand, within CA264_15300at 3580.520 kb on - strand, within CA264_15300at 3580.541 kb on + strand, within CA264_15300at 3580.561 kb on + strand, within CA264_15300at 3580.561 kb on + strand, within CA264_15300at 3580.562 kb on - strand, within CA264_15300at 3580.563 kb on + strand, within CA264_15300at 3580.640 kb on - strand, within CA264_15300at 3580.743 kb on + strand, within CA264_15300at 3580.743 kb on + strand, within CA264_15300at 3580.743 kb on + strand, within CA264_15300at 3580.744 kb on - strand, within CA264_15300at 3580.744 kb on - strand, within CA264_15300at 3580.798 kb on - strand, within CA264_15300at 3580.802 kb on + strand, within CA264_15300at 3580.840 kb on + strand, within CA264_15300at 3580.840 kb on + strand, within CA264_15300at 3580.842 kb on + strand, within CA264_15300at 3580.842 kb on + strand, within CA264_15300at 3580.842 kb on + strand, within CA264_15300at 3580.843 kb on - strand, within CA264_15300at 3580.859 kb on + strand, within CA264_15300at 3580.860 kb on - strand, within CA264_15300at 3580.872 kb on - strand, within CA264_15300at 3580.883 kb on + strand, within CA264_15300at 3580.884 kb on - strand, within CA264_15300at 3580.892 kb on + strand, within CA264_15300at 3580.892 kb on + strand, within CA264_15300at 3580.892 kb on + strand, within CA264_15300at 3580.894 kb on + strand, within CA264_15300at 3580.911 kb on - strand, within CA264_15300at 3580.916 kb on - strand, within CA264_15300at 3580.916 kb on - strand, within CA264_15300at 3580.925 kb on - strand, within CA264_15300at 3580.932 kb on + strand, within CA264_15300at 3580.934 kb on + strand, within CA264_15300at 3581.257 kb on + strandat 3581.293 kb on + strandat 3581.294 kb on - strandat 3581.306 kb on + strandat 3581.307 kb on - strandat 3581.384 kb on + strandat 3581.389 kb on + strandat 3581.389 kb on + strandat 3581.390 kb on - strandat 3581.390 kb on - strandat 3581.390 kb on - strandat 3581.406 kb on + strandat 3581.406 kb on + strandat 3581.410 kb on + strand, within CA264_15305at 3581.411 kb on - strand, within CA264_15305at 3581.421 kb on + strand, within CA264_15305at 3581.421 kb on + strand, within CA264_15305at 3581.421 kb on + strand, within CA264_15305at 3581.422 kb on - strand, within CA264_15305at 3581.424 kb on + strand, within CA264_15305at 3581.473 kb on + strand, within CA264_15305at 3581.473 kb on + strand, within CA264_15305at 3581.478 kb on + strand, within CA264_15305at 3581.479 kb on - strand, within CA264_15305at 3581.481 kb on - strand, within CA264_15305at 3581.568 kb on - strand, within CA264_15305at 3581.583 kb on + strand, within CA264_15305at 3581.583 kb on + strand, within CA264_15305at 3581.584 kb on - strand, within CA264_15305at 3581.586 kb on + strand, within CA264_15305at 3581.587 kb on - strand, within CA264_15305at 3581.624 kb on + strand, within CA264_15305at 3581.625 kb on - strand, within CA264_15305at 3581.625 kb on - strand, within CA264_15305at 3581.658 kb on + strand, within CA264_15305at 3581.662 kb on + strand, within CA264_15305at 3581.700 kb on + strand, within CA264_15305at 3581.706 kb on + strand, within CA264_15305at 3581.707 kb on - strand, within CA264_15305at 3582.167 kb on + strand, within CA264_15305at 3582.192 kb on - strand, within CA264_15305at 3582.207 kb on - strand, within CA264_15305at 3582.211 kb on + strand, within CA264_15305at 3582.212 kb on - strand, within CA264_15305

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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3,579,293 + -0.7
3,579,294 + -1.0
3,579,294 - +1.0
3,579,316 - +1.0
3,579,329 - +1.3
3,579,396 + +0.5
3,579,424 + +0.3
3,579,425 - +0.2
3,579,436 + -1.3
3,579,436 + +2.0
3,579,436 + +0.4
3,579,459 - +0.0
3,579,467 + -0.5
3,579,467 + -0.2
3,579,468 - -0.7
3,579,506 + -0.1
3,579,506 + -0.3
3,579,506 + -0.3
3,579,507 - -0.2
3,579,543 + -1.1
3,579,544 - -0.4
3,579,544 - +0.9
3,579,590 - -0.7
3,579,610 + CA264_15295 0.12 +0.4
3,579,610 + CA264_15295 0.12 -0.3
3,579,611 - CA264_15295 0.12 -1.3
3,579,630 - CA264_15295 0.15 -0.6
3,579,634 + CA264_15295 0.15 -1.0
3,579,635 - CA264_15295 0.15 -0.6
3,579,666 - CA264_15295 0.20 -0.9
3,579,666 - CA264_15295 0.20 +1.1
3,579,707 - CA264_15295 0.26 -0.4
3,579,733 + CA264_15295 0.29 +1.3
3,579,734 - CA264_15295 0.29 +1.1
3,579,747 + CA264_15295 0.31 +0.0
3,579,747 + CA264_15295 0.31 +0.3
3,579,877 - CA264_15295 0.49 -0.6
3,579,903 + CA264_15295 0.53 +0.1
3,579,903 + CA264_15295 0.53 -0.8
3,580,120 + CA264_15295 0.83 -0.3
3,580,120 + CA264_15295 0.83 -1.1
3,580,121 - CA264_15295 0.83 -0.1
3,580,121 - CA264_15295 0.83 +0.7
3,580,203 + -0.1
3,580,203 + -0.3
3,580,207 + -1.1
3,580,207 + -1.8
3,580,207 + +1.3
3,580,208 - -0.3
3,580,208 - +0.3
3,580,208 - -1.9
3,580,233 - -0.0
3,580,234 + -0.2
3,580,235 - -1.5
3,580,245 + +0.3
3,580,285 + -0.7
3,580,302 + +0.0
3,580,306 + -0.3
3,580,328 + -0.4
3,580,328 + +0.2
3,580,328 + -0.2
3,580,329 - -0.1
3,580,329 - -0.5
3,580,329 - +0.4
3,580,329 - +2.3
3,580,347 - +1.3
3,580,413 - CA264_15300 0.16 +0.3
3,580,423 + CA264_15300 0.17 +0.1
3,580,424 - CA264_15300 0.17 -1.9
3,580,424 - CA264_15300 0.17 -0.3
3,580,520 - CA264_15300 0.27 +0.3
3,580,541 + CA264_15300 0.29 -0.5
3,580,561 + CA264_15300 0.31 -1.1
3,580,561 + CA264_15300 0.31 -0.7
3,580,562 - CA264_15300 0.31 +0.4
3,580,563 + CA264_15300 0.31 -1.9
3,580,640 - CA264_15300 0.38 -0.5
3,580,743 + CA264_15300 0.48 +0.2
3,580,743 + CA264_15300 0.48 -1.1
3,580,743 + CA264_15300 0.48 -1.0
3,580,744 - CA264_15300 0.48 +0.7
3,580,744 - CA264_15300 0.48 -0.9
3,580,798 - CA264_15300 0.54 -0.1
3,580,802 + CA264_15300 0.54 -0.7
3,580,840 + CA264_15300 0.58 +0.8
3,580,840 + CA264_15300 0.58 -0.1
3,580,842 + CA264_15300 0.58 -0.4
3,580,842 + CA264_15300 0.58 +0.0
3,580,842 + CA264_15300 0.58 -3.2
3,580,843 - CA264_15300 0.58 -0.8
3,580,859 + CA264_15300 0.60 +0.3
3,580,860 - CA264_15300 0.60 -1.6
3,580,872 - CA264_15300 0.61 -0.7
3,580,883 + CA264_15300 0.62 +0.3
3,580,884 - CA264_15300 0.62 -0.1
3,580,892 + CA264_15300 0.63 +0.1
3,580,892 + CA264_15300 0.63 -0.5
3,580,892 + CA264_15300 0.63 +1.6
3,580,894 + CA264_15300 0.63 -0.7
3,580,911 - CA264_15300 0.65 +0.1
3,580,916 - CA264_15300 0.65 +0.8
3,580,916 - CA264_15300 0.65 -1.2
3,580,925 - CA264_15300 0.66 -0.9
3,580,932 + CA264_15300 0.67 -2.4
3,580,934 + CA264_15300 0.67 +0.3
3,581,257 + -0.2
3,581,293 + -0.1
3,581,294 - -1.7
3,581,306 + +0.1
3,581,307 - -0.1
3,581,384 + +0.0
3,581,389 + +0.1
3,581,389 + -0.1
3,581,390 - +0.2
3,581,390 - -0.1
3,581,390 - -0.5
3,581,406 + +0.2
3,581,406 + -0.1
3,581,410 + CA264_15305 0.10 +0.5
3,581,411 - CA264_15305 0.10 +0.3
3,581,421 + CA264_15305 0.11 -0.4
3,581,421 + CA264_15305 0.11 +0.3
3,581,421 + CA264_15305 0.11 -0.7
3,581,422 - CA264_15305 0.11 +0.5
3,581,424 + CA264_15305 0.11 +0.4
3,581,473 + CA264_15305 0.16 +0.5
3,581,473 + CA264_15305 0.16 -0.6
3,581,478 + CA264_15305 0.17 +0.9
3,581,479 - CA264_15305 0.17 -0.1
3,581,481 - CA264_15305 0.17 -0.7
3,581,568 - CA264_15305 0.25 +0.9
3,581,583 + CA264_15305 0.27 -0.7
3,581,583 + CA264_15305 0.27 -0.3
3,581,584 - CA264_15305 0.27 +1.3
3,581,586 + CA264_15305 0.27 -1.3
3,581,587 - CA264_15305 0.27 -0.4
3,581,624 + CA264_15305 0.31 +0.3
3,581,625 - CA264_15305 0.31 -1.3
3,581,625 - CA264_15305 0.31 -1.2
3,581,658 + CA264_15305 0.34 +0.3
3,581,662 + CA264_15305 0.34 +0.7
3,581,700 + CA264_15305 0.38 +0.1
3,581,706 + CA264_15305 0.39 +0.9
3,581,707 - CA264_15305 0.39 +0.0
3,582,167 + CA264_15305 0.83 -0.1
3,582,192 - CA264_15305 0.86 -0.6
3,582,207 - CA264_15305 0.87 -1.1
3,582,211 + CA264_15305 0.88 +0.3
3,582,212 - CA264_15305 0.88 -0.3

Or see this region's nucleotide sequence