Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15170 and CA264_15175 are separated by 19 nucleotides CA264_15175 and CA264_15180 are separated by 3 nucleotides CA264_15180 and CA264_15185 are separated by 194 nucleotides
CA264_15170: CA264_15170 - biopolymer transporter ExbD, at 3,556,180 to 3,556,785
_15170
CA264_15175: CA264_15175 - biopolymer transporter ExbD, at 3,556,805 to 3,557,329
_15175
CA264_15180: CA264_15180 - energy transducer TonB, at 3,557,333 to 3,558,163
_15180
CA264_15185: CA264_15185 - hypothetical protein, at 3,558,358 to 3,559,194
_15185
Position (kb)
3557
3558
3559 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3556.380 kb on + strand, within CA264_15170 at 3556.427 kb on + strand, within CA264_15170 at 3556.597 kb on - strand, within CA264_15170 at 3556.626 kb on - strand, within CA264_15170 at 3556.783 kb on + strand at 3556.784 kb on - strand at 3556.804 kb on - strand at 3557.069 kb on + strand, within CA264_15175 at 3557.235 kb on + strand, within CA264_15175 at 3557.344 kb on + strand at 3557.408 kb on + strand at 3557.660 kb on - strand, within CA264_15180 at 3557.838 kb on + strand, within CA264_15180 at 3557.857 kb on + strand, within CA264_15180 at 3557.857 kb on + strand, within CA264_15180 at 3557.861 kb on + strand, within CA264_15180 at 3557.977 kb on - strand, within CA264_15180 at 3558.161 kb on + strand at 3558.247 kb on + strand at 3558.250 kb on + strand at 3558.251 kb on - strand at 3558.251 kb on - strand at 3558.255 kb on - strand at 3558.327 kb on + strand at 3558.373 kb on + strand at 3558.377 kb on + strand at 3558.452 kb on - strand, within CA264_15185 at 3558.462 kb on + strand, within CA264_15185 at 3558.493 kb on - strand, within CA264_15185 at 3558.556 kb on + strand, within CA264_15185 at 3558.571 kb on + strand, within CA264_15185 at 3558.571 kb on + strand, within CA264_15185 at 3558.571 kb on + strand, within CA264_15185 at 3558.571 kb on + strand, within CA264_15185 at 3558.572 kb on - strand, within CA264_15185 at 3558.572 kb on - strand, within CA264_15185 at 3558.590 kb on - strand, within CA264_15185 at 3558.606 kb on + strand, within CA264_15185 at 3558.892 kb on + strand, within CA264_15185 at 3558.892 kb on + strand, within CA264_15185 at 3558.892 kb on + strand, within CA264_15185 at 3558.893 kb on - strand, within CA264_15185
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 3,556,380 + CA264_15170 0.33 +3.8 3,556,427 + CA264_15170 0.41 +1.0 3,556,597 - CA264_15170 0.69 +1.5 3,556,626 - CA264_15170 0.74 +0.2 3,556,783 + -0.1 3,556,784 - +2.8 3,556,804 - +0.6 3,557,069 + CA264_15175 0.50 +2.2 3,557,235 + CA264_15175 0.82 +1.4 3,557,344 + +0.9 3,557,408 + +0.9 3,557,660 - CA264_15180 0.39 +1.7 3,557,838 + CA264_15180 0.61 -0.3 3,557,857 + CA264_15180 0.63 +1.1 3,557,857 + CA264_15180 0.63 +1.0 3,557,861 + CA264_15180 0.64 +1.7 3,557,977 - CA264_15180 0.77 +1.7 3,558,161 + -0.4 3,558,247 + -0.6 3,558,250 + -0.3 3,558,251 - +0.4 3,558,251 - -0.8 3,558,255 - -0.5 3,558,327 + -0.9 3,558,373 + +2.0 3,558,377 + -0.3 3,558,452 - CA264_15185 0.11 -1.6 3,558,462 + CA264_15185 0.12 -1.0 3,558,493 - CA264_15185 0.16 -0.2 3,558,556 + CA264_15185 0.24 +0.8 3,558,571 + CA264_15185 0.25 +0.8 3,558,571 + CA264_15185 0.25 -2.2 3,558,571 + CA264_15185 0.25 -0.7 3,558,571 + CA264_15185 0.25 -1.1 3,558,572 - CA264_15185 0.26 -0.7 3,558,572 - CA264_15185 0.26 -0.1 3,558,590 - CA264_15185 0.28 -0.8 3,558,606 + CA264_15185 0.30 +2.8 3,558,892 + CA264_15185 0.64 +0.2 3,558,892 + CA264_15185 0.64 +1.2 3,558,892 + CA264_15185 0.64 -1.3 3,558,893 - CA264_15185 0.64 +0.0
Or see this region's nucleotide sequence