Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10255

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10250 and CA264_10255 are separated by 664 nucleotidesCA264_10255 and CA264_10260 are separated by 496 nucleotides CA264_10250: CA264_10250 - AAA family ATPase, at 2,381,929 to 2,383,383 _10250 CA264_10255: CA264_10255 - hypothetical protein, at 2,384,048 to 2,384,311 _10255 CA264_10260: CA264_10260 - hypothetical protein, at 2,384,808 to 2,386,628 _10260 Position (kb) 2384 2385Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2383.080 kb on - strand, within CA264_10250at 2383.397 kb on - strandat 2383.406 kb on + strandat 2383.406 kb on + strandat 2383.406 kb on + strandat 2383.407 kb on - strandat 2383.407 kb on - strandat 2383.407 kb on - strandat 2383.407 kb on - strandat 2383.407 kb on - strandat 2383.407 kb on - strandat 2383.407 kb on - strandat 2383.407 kb on - strandat 2383.408 kb on + strandat 2383.408 kb on + strandat 2383.408 kb on + strandat 2383.408 kb on + strandat 2383.408 kb on + strandat 2383.408 kb on + strandat 2383.408 kb on + strandat 2383.408 kb on + strandat 2383.409 kb on - strandat 2383.409 kb on - strandat 2383.409 kb on - strandat 2383.409 kb on - strandat 2383.409 kb on - strandat 2383.409 kb on - strandat 2383.415 kb on - strandat 2383.415 kb on - strandat 2383.463 kb on - strandat 2383.470 kb on + strandat 2383.471 kb on - strandat 2383.493 kb on + strandat 2383.499 kb on - strandat 2383.562 kb on - strandat 2383.636 kb on + strandat 2383.709 kb on + strandat 2383.713 kb on - strandat 2383.716 kb on + strandat 2383.716 kb on + strandat 2383.720 kb on + strandat 2383.721 kb on - strandat 2383.773 kb on + strandat 2383.831 kb on - strandat 2383.863 kb on - strandat 2383.903 kb on + strandat 2383.904 kb on - strandat 2383.907 kb on + strandat 2383.907 kb on + strandat 2383.908 kb on - strandat 2383.908 kb on - strandat 2384.020 kb on + strandat 2384.020 kb on + strandat 2384.020 kb on + strandat 2384.021 kb on - strandat 2384.025 kb on - strandat 2384.035 kb on + strandat 2384.036 kb on - strandat 2384.055 kb on - strandat 2384.061 kb on - strandat 2384.061 kb on - strandat 2384.116 kb on + strand, within CA264_10255at 2384.145 kb on - strand, within CA264_10255at 2384.156 kb on + strand, within CA264_10255at 2384.183 kb on + strand, within CA264_10255at 2384.307 kb on - strandat 2384.309 kb on + strandat 2384.309 kb on + strandat 2384.310 kb on - strandat 2384.310 kb on - strandat 2384.310 kb on - strandat 2384.310 kb on - strandat 2384.361 kb on - strandat 2384.367 kb on - strandat 2384.370 kb on + strandat 2384.370 kb on + strandat 2384.370 kb on + strandat 2384.370 kb on + strandat 2384.370 kb on + strandat 2384.370 kb on + strandat 2384.370 kb on + strandat 2384.370 kb on + strandat 2384.371 kb on - strandat 2384.371 kb on - strandat 2384.371 kb on - strandat 2384.371 kb on - strandat 2384.371 kb on - strandat 2384.489 kb on - strandat 2384.611 kb on + strandat 2384.617 kb on + strandat 2384.769 kb on - strandat 2384.780 kb on - strandat 2384.845 kb on + strandat 2384.846 kb on - strandat 2384.860 kb on + strandat 2384.860 kb on + strandat 2384.860 kb on + strandat 2384.897 kb on + strandat 2384.897 kb on + strandat 2384.974 kb on + strandat 2384.978 kb on + strandat 2384.994 kb on - strand, within CA264_10260at 2384.997 kb on - strand, within CA264_10260at 2385.048 kb on + strand, within CA264_10260at 2385.049 kb on - strand, within CA264_10260at 2385.258 kb on + strand, within CA264_10260at 2385.258 kb on + strand, within CA264_10260at 2385.259 kb on - strand, within CA264_10260at 2385.262 kb on + strand, within CA264_10260at 2385.262 kb on + strand, within CA264_10260at 2385.263 kb on - strand, within CA264_10260

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,383,080 - CA264_10250 0.79 +0.2
2,383,397 - +0.1
2,383,406 + -0.4
2,383,406 + -0.9
2,383,406 + +0.3
2,383,407 - +0.5
2,383,407 - +0.4
2,383,407 - -0.4
2,383,407 - +0.2
2,383,407 - +1.2
2,383,407 - -0.2
2,383,407 - +0.2
2,383,407 - -1.1
2,383,408 + -0.3
2,383,408 + +0.1
2,383,408 + -0.0
2,383,408 + -1.0
2,383,408 + +1.1
2,383,408 + -0.1
2,383,408 + -0.4
2,383,408 + -0.4
2,383,409 - -0.9
2,383,409 - -1.3
2,383,409 - +0.4
2,383,409 - -0.7
2,383,409 - +0.4
2,383,409 - -0.5
2,383,415 - +0.6
2,383,415 - +0.5
2,383,463 - +1.2
2,383,470 + -0.5
2,383,471 - +0.9
2,383,493 + +0.7
2,383,499 - +0.9
2,383,562 - +0.6
2,383,636 + +0.9
2,383,709 + -2.0
2,383,713 - -0.7
2,383,716 + -0.1
2,383,716 + +0.2
2,383,720 + -0.2
2,383,721 - -0.5
2,383,773 + -0.5
2,383,831 - -0.2
2,383,863 - -0.6
2,383,903 + +0.9
2,383,904 - -0.2
2,383,907 + +0.1
2,383,907 + +0.2
2,383,908 - +0.2
2,383,908 - -0.6
2,384,020 + +1.9
2,384,020 + +0.3
2,384,020 + -0.1
2,384,021 - -1.5
2,384,025 - +0.1
2,384,035 + -1.4
2,384,036 - +0.0
2,384,055 - +1.2
2,384,061 - +1.5
2,384,061 - +0.3
2,384,116 + CA264_10255 0.26 +1.6
2,384,145 - CA264_10255 0.37 +0.9
2,384,156 + CA264_10255 0.41 +0.1
2,384,183 + CA264_10255 0.51 -0.1
2,384,307 - -0.2
2,384,309 + +1.9
2,384,309 + -0.5
2,384,310 - -1.4
2,384,310 - -0.9
2,384,310 - +0.3
2,384,310 - -3.1
2,384,361 - -0.2
2,384,367 - +0.2
2,384,370 + -0.6
2,384,370 + +0.7
2,384,370 + +0.6
2,384,370 + -0.3
2,384,370 + -0.5
2,384,370 + -2.1
2,384,370 + -0.3
2,384,370 + -0.1
2,384,371 - +0.3
2,384,371 - +0.3
2,384,371 - -0.1
2,384,371 - +0.2
2,384,371 - -0.4
2,384,489 - -0.4
2,384,611 + -0.8
2,384,617 + -0.5
2,384,769 - -0.2
2,384,780 - -0.4
2,384,845 + +0.2
2,384,846 - -1.1
2,384,860 + -1.6
2,384,860 + +1.1
2,384,860 + +0.7
2,384,897 + +0.4
2,384,897 + +0.2
2,384,974 + -0.8
2,384,978 + -0.6
2,384,994 - CA264_10260 0.10 -1.1
2,384,997 - CA264_10260 0.10 +0.4
2,385,048 + CA264_10260 0.13 +0.0
2,385,049 - CA264_10260 0.13 -0.3
2,385,258 + CA264_10260 0.25 -0.2
2,385,258 + CA264_10260 0.25 +1.9
2,385,259 - CA264_10260 0.25 -1.2
2,385,262 + CA264_10260 0.25 +0.0
2,385,262 + CA264_10260 0.25 -0.3
2,385,263 - CA264_10260 0.25 +1.5

Or see this region's nucleotide sequence