Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09570

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09565 and CA264_09570 are separated by 487 nucleotidesCA264_09570 and CA264_09575 are separated by 173 nucleotides CA264_09565: CA264_09565 - amino acid transporter, at 2,232,853 to 2,234,586 _09565 CA264_09570: CA264_09570 - amino acid permease, at 2,235,074 to 2,236,567 _09570 CA264_09575: CA264_09575 - hypothetical protein, at 2,236,741 to 2,237,169 _09575 Position (kb) 2235 2236 2237Strain fitness (log2 ratio) -2 -1 0 1 2at 2234.117 kb on + strand, within CA264_09565at 2234.162 kb on + strand, within CA264_09565at 2234.236 kb on + strand, within CA264_09565at 2234.236 kb on + strand, within CA264_09565at 2234.237 kb on - strand, within CA264_09565at 2234.237 kb on - strand, within CA264_09565at 2234.251 kb on + strand, within CA264_09565at 2234.316 kb on + strand, within CA264_09565at 2234.366 kb on + strand, within CA264_09565at 2234.459 kb on + strandat 2234.539 kb on + strandat 2234.592 kb on + strandat 2234.593 kb on - strandat 2234.593 kb on - strandat 2234.852 kb on + strandat 2234.926 kb on + strandat 2234.926 kb on + strandat 2235.002 kb on - strandat 2235.019 kb on + strandat 2235.019 kb on + strandat 2235.019 kb on + strandat 2235.065 kb on + strandat 2235.065 kb on + strandat 2235.065 kb on + strandat 2235.065 kb on + strandat 2235.066 kb on - strandat 2235.066 kb on - strandat 2235.066 kb on - strandat 2235.066 kb on - strandat 2235.211 kb on + strandat 2235.332 kb on - strand, within CA264_09570at 2235.356 kb on + strand, within CA264_09570at 2235.362 kb on + strand, within CA264_09570at 2235.362 kb on + strand, within CA264_09570at 2235.363 kb on - strand, within CA264_09570at 2235.369 kb on - strand, within CA264_09570at 2235.369 kb on - strand, within CA264_09570at 2235.514 kb on + strand, within CA264_09570at 2235.515 kb on - strand, within CA264_09570at 2235.713 kb on + strand, within CA264_09570at 2235.920 kb on - strand, within CA264_09570at 2235.936 kb on - strand, within CA264_09570at 2235.939 kb on + strand, within CA264_09570at 2235.940 kb on - strand, within CA264_09570at 2236.046 kb on + strand, within CA264_09570at 2236.100 kb on - strand, within CA264_09570at 2236.100 kb on - strand, within CA264_09570at 2236.100 kb on - strand, within CA264_09570at 2236.173 kb on + strand, within CA264_09570at 2236.196 kb on + strand, within CA264_09570at 2236.196 kb on + strand, within CA264_09570at 2236.319 kb on - strand, within CA264_09570at 2236.321 kb on + strand, within CA264_09570at 2236.322 kb on - strand, within CA264_09570at 2236.324 kb on + strand, within CA264_09570at 2236.401 kb on + strand, within CA264_09570at 2236.405 kb on + strand, within CA264_09570at 2236.406 kb on - strand, within CA264_09570at 2236.488 kb on - strandat 2236.496 kb on + strandat 2236.497 kb on - strandat 2236.497 kb on - strandat 2236.565 kb on + strandat 2236.565 kb on + strandat 2236.565 kb on + strandat 2236.566 kb on - strandat 2236.569 kb on - strandat 2236.582 kb on - strandat 2236.639 kb on + strandat 2236.640 kb on - strandat 2236.641 kb on + strandat 2236.641 kb on + strandat 2236.642 kb on - strandat 2236.681 kb on - strandat 2236.694 kb on + strandat 2236.713 kb on - strandat 2236.724 kb on - strandat 2236.724 kb on - strandat 2236.726 kb on - strandat 2236.854 kb on - strand, within CA264_09575at 2236.854 kb on - strand, within CA264_09575at 2236.854 kb on - strand, within CA264_09575at 2236.859 kb on - strand, within CA264_09575at 2236.859 kb on - strand, within CA264_09575at 2236.965 kb on - strand, within CA264_09575at 2236.976 kb on + strand, within CA264_09575at 2236.976 kb on + strand, within CA264_09575at 2236.976 kb on + strand, within CA264_09575at 2236.976 kb on + strand, within CA264_09575at 2236.977 kb on - strand, within CA264_09575at 2236.977 kb on - strand, within CA264_09575at 2237.013 kb on + strand, within CA264_09575at 2237.033 kb on - strand, within CA264_09575at 2237.106 kb on - strand, within CA264_09575at 2237.106 kb on - strand, within CA264_09575at 2237.106 kb on - strand, within CA264_09575at 2237.112 kb on + strand, within CA264_09575at 2237.113 kb on - strand, within CA264_09575at 2237.113 kb on - strand, within CA264_09575at 2237.115 kb on - strand, within CA264_09575at 2237.221 kb on - strandat 2237.370 kb on + strandat 2237.379 kb on - strandat 2237.421 kb on - strandat 2237.451 kb on + strandat 2237.514 kb on - strandat 2237.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,234,117 + CA264_09565 0.73 -0.1
2,234,162 + CA264_09565 0.75 +0.7
2,234,236 + CA264_09565 0.80 +0.6
2,234,236 + CA264_09565 0.80 +0.3
2,234,237 - CA264_09565 0.80 +0.3
2,234,237 - CA264_09565 0.80 -2.1
2,234,251 + CA264_09565 0.81 +0.2
2,234,316 + CA264_09565 0.84 +0.0
2,234,366 + CA264_09565 0.87 -0.0
2,234,459 + +0.6
2,234,539 + -0.4
2,234,592 + +1.3
2,234,593 - -0.0
2,234,593 - -0.1
2,234,852 + -0.9
2,234,926 + +0.9
2,234,926 + +0.0
2,235,002 - +1.1
2,235,019 + +1.1
2,235,019 + +0.8
2,235,019 + +1.0
2,235,065 + -2.7
2,235,065 + -0.2
2,235,065 + +0.6
2,235,065 + +1.9
2,235,066 - +1.3
2,235,066 - +1.4
2,235,066 - +0.1
2,235,066 - -1.0
2,235,211 + -0.9
2,235,332 - CA264_09570 0.17 +0.1
2,235,356 + CA264_09570 0.19 -0.1
2,235,362 + CA264_09570 0.19 -0.2
2,235,362 + CA264_09570 0.19 +0.9
2,235,363 - CA264_09570 0.19 +0.4
2,235,369 - CA264_09570 0.20 -1.7
2,235,369 - CA264_09570 0.20 -0.7
2,235,514 + CA264_09570 0.29 -0.5
2,235,515 - CA264_09570 0.30 +0.2
2,235,713 + CA264_09570 0.43 -1.2
2,235,920 - CA264_09570 0.57 -0.8
2,235,936 - CA264_09570 0.58 -0.8
2,235,939 + CA264_09570 0.58 +0.6
2,235,940 - CA264_09570 0.58 -0.1
2,236,046 + CA264_09570 0.65 +0.9
2,236,100 - CA264_09570 0.69 -1.4
2,236,100 - CA264_09570 0.69 -0.2
2,236,100 - CA264_09570 0.69 +0.5
2,236,173 + CA264_09570 0.74 -1.7
2,236,196 + CA264_09570 0.75 -1.1
2,236,196 + CA264_09570 0.75 -0.3
2,236,319 - CA264_09570 0.83 -1.3
2,236,321 + CA264_09570 0.83 -0.4
2,236,322 - CA264_09570 0.84 -0.8
2,236,324 + CA264_09570 0.84 -0.6
2,236,401 + CA264_09570 0.89 -0.1
2,236,405 + CA264_09570 0.89 +0.3
2,236,406 - CA264_09570 0.89 -0.7
2,236,488 - +0.8
2,236,496 + -1.1
2,236,497 - -1.1
2,236,497 - -0.4
2,236,565 + -2.1
2,236,565 + +1.8
2,236,565 + -0.1
2,236,566 - -0.1
2,236,569 - -1.6
2,236,582 - +0.9
2,236,639 + +0.0
2,236,640 - -0.7
2,236,641 + +0.7
2,236,641 + +0.1
2,236,642 - +0.2
2,236,681 - +0.5
2,236,694 + +1.2
2,236,713 - -0.2
2,236,724 - +0.5
2,236,724 - -0.4
2,236,726 - -1.0
2,236,854 - CA264_09575 0.26 -0.5
2,236,854 - CA264_09575 0.26 -0.4
2,236,854 - CA264_09575 0.26 -1.1
2,236,859 - CA264_09575 0.28 -2.1
2,236,859 - CA264_09575 0.28 -1.2
2,236,965 - CA264_09575 0.52 -2.0
2,236,976 + CA264_09575 0.55 +0.0
2,236,976 + CA264_09575 0.55 +2.7
2,236,976 + CA264_09575 0.55 +0.0
2,236,976 + CA264_09575 0.55 -0.4
2,236,977 - CA264_09575 0.55 +1.1
2,236,977 - CA264_09575 0.55 -0.3
2,237,013 + CA264_09575 0.63 -0.6
2,237,033 - CA264_09575 0.68 +0.2
2,237,106 - CA264_09575 0.85 -0.2
2,237,106 - CA264_09575 0.85 +0.1
2,237,106 - CA264_09575 0.85 -0.9
2,237,112 + CA264_09575 0.86 +0.1
2,237,113 - CA264_09575 0.87 -0.1
2,237,113 - CA264_09575 0.87 -0.1
2,237,115 - CA264_09575 0.87 -0.0
2,237,221 - -0.7
2,237,370 + +0.3
2,237,379 - +0.4
2,237,421 - +0.1
2,237,451 + -0.9
2,237,514 - +0.4
2,237,523 - -0.5

Or see this region's nucleotide sequence