Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08160

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08150 and CA264_08155 are separated by 66 nucleotidesCA264_08155 and CA264_08160 are separated by 42 nucleotidesCA264_08160 and CA264_08165 are separated by 236 nucleotides CA264_08150: CA264_08150 - radical SAM protein, at 1,881,572 to 1,882,636 _08150 CA264_08155: CA264_08155 - hypothetical protein, at 1,882,703 to 1,883,545 _08155 CA264_08160: CA264_08160 - catalase, at 1,883,588 to 1,884,475 _08160 CA264_08165: CA264_08165 - FRG domain-containing protein, at 1,884,712 to 1,885,503 _08165 Position (kb) 1883 1884 1885Strain fitness (log2 ratio) -2 -1 0 1 2at 1882.589 kb on + strandat 1882.590 kb on - strandat 1882.697 kb on + strandat 1882.697 kb on + strandat 1882.697 kb on + strandat 1882.697 kb on + strandat 1882.698 kb on - strandat 1882.698 kb on - strandat 1882.698 kb on - strandat 1882.698 kb on - strandat 1882.702 kb on + strandat 1882.703 kb on - strandat 1882.744 kb on - strandat 1882.903 kb on - strand, within CA264_08155at 1882.952 kb on - strand, within CA264_08155at 1883.175 kb on - strand, within CA264_08155at 1883.179 kb on + strand, within CA264_08155at 1883.180 kb on - strand, within CA264_08155at 1883.183 kb on + strand, within CA264_08155at 1883.321 kb on + strand, within CA264_08155at 1883.367 kb on + strand, within CA264_08155at 1883.407 kb on + strand, within CA264_08155at 1883.414 kb on - strand, within CA264_08155at 1883.432 kb on + strand, within CA264_08155at 1883.441 kb on + strand, within CA264_08155at 1883.441 kb on + strand, within CA264_08155at 1883.442 kb on - strand, within CA264_08155at 1883.544 kb on - strandat 1883.581 kb on + strandat 1883.581 kb on + strandat 1883.582 kb on - strandat 1883.583 kb on + strandat 1883.589 kb on + strandat 1883.589 kb on + strandat 1883.686 kb on + strand, within CA264_08160at 1883.826 kb on + strand, within CA264_08160at 1883.830 kb on + strand, within CA264_08160at 1883.831 kb on - strand, within CA264_08160at 1884.048 kb on + strand, within CA264_08160at 1884.049 kb on - strand, within CA264_08160at 1884.049 kb on - strand, within CA264_08160at 1884.052 kb on + strand, within CA264_08160at 1884.052 kb on + strand, within CA264_08160at 1884.052 kb on + strandat 1884.053 kb on - strand, within CA264_08160at 1884.053 kb on - strand, within CA264_08160at 1884.053 kb on - strand, within CA264_08160at 1884.053 kb on - strand, within CA264_08160at 1884.110 kb on - strand, within CA264_08160at 1884.117 kb on - strand, within CA264_08160at 1884.117 kb on - strand, within CA264_08160at 1884.132 kb on - strand, within CA264_08160at 1884.190 kb on + strand, within CA264_08160at 1884.368 kb on + strand, within CA264_08160at 1884.380 kb on + strand, within CA264_08160at 1884.380 kb on + strand, within CA264_08160at 1884.380 kb on + strand, within CA264_08160at 1884.381 kb on - strand, within CA264_08160at 1884.381 kb on - strand, within CA264_08160at 1884.401 kb on + strandat 1884.460 kb on + strandat 1884.461 kb on - strandat 1884.476 kb on - strandat 1884.476 kb on - strandat 1884.482 kb on - strandat 1884.489 kb on - strandat 1884.489 kb on - strandat 1884.493 kb on + strandat 1884.493 kb on + strandat 1884.551 kb on - strandat 1884.555 kb on - strandat 1884.555 kb on - strandat 1884.555 kb on - strandat 1884.650 kb on + strandat 1884.680 kb on + strandat 1884.734 kb on + strandat 1884.795 kb on - strand, within CA264_08165at 1884.814 kb on + strand, within CA264_08165at 1884.814 kb on + strand, within CA264_08165at 1884.815 kb on - strand, within CA264_08165at 1885.022 kb on - strand, within CA264_08165at 1885.022 kb on - strand, within CA264_08165at 1885.034 kb on + strand, within CA264_08165at 1885.035 kb on - strand, within CA264_08165at 1885.035 kb on - strand, within CA264_08165at 1885.035 kb on - strand, within CA264_08165at 1885.099 kb on - strand, within CA264_08165at 1885.102 kb on + strand, within CA264_08165at 1885.240 kb on + strand, within CA264_08165at 1885.240 kb on + strand, within CA264_08165at 1885.240 kb on + strand, within CA264_08165at 1885.241 kb on - strand, within CA264_08165at 1885.291 kb on + strand, within CA264_08165at 1885.291 kb on + strand, within CA264_08165at 1885.335 kb on + strand, within CA264_08165

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,882,589 + -2.1
1,882,590 - -0.8
1,882,697 + -0.2
1,882,697 + +0.4
1,882,697 + +0.3
1,882,697 + -0.1
1,882,698 - -0.7
1,882,698 - +0.1
1,882,698 - -0.7
1,882,698 - -0.7
1,882,702 + -1.4
1,882,703 - +0.8
1,882,744 - -0.7
1,882,903 - CA264_08155 0.24 -1.7
1,882,952 - CA264_08155 0.30 +0.3
1,883,175 - CA264_08155 0.56 +1.3
1,883,179 + CA264_08155 0.56 +0.3
1,883,180 - CA264_08155 0.57 -0.6
1,883,183 + CA264_08155 0.57 +0.5
1,883,321 + CA264_08155 0.73 +0.0
1,883,367 + CA264_08155 0.79 -0.8
1,883,407 + CA264_08155 0.84 -1.8
1,883,414 - CA264_08155 0.84 -0.7
1,883,432 + CA264_08155 0.86 +0.6
1,883,441 + CA264_08155 0.88 -0.5
1,883,441 + CA264_08155 0.88 -0.7
1,883,442 - CA264_08155 0.88 +0.5
1,883,544 - -0.9
1,883,581 + -0.7
1,883,581 + -1.3
1,883,582 - +0.2
1,883,583 + -1.0
1,883,589 + -0.8
1,883,589 + +0.9
1,883,686 + CA264_08160 0.11 -0.3
1,883,826 + CA264_08160 0.27 +0.5
1,883,830 + CA264_08160 0.27 -1.7
1,883,831 - CA264_08160 0.27 +0.1
1,884,048 + CA264_08160 0.52 +0.4
1,884,049 - CA264_08160 0.52 +0.4
1,884,049 - CA264_08160 0.52 -1.1
1,884,052 + CA264_08160 0.52 +0.6
1,884,052 + CA264_08160 0.52 -0.3
1,884,052 + +2.2
1,884,053 - CA264_08160 0.52 -0.1
1,884,053 - CA264_08160 0.52 +0.7
1,884,053 - CA264_08160 0.52 -0.6
1,884,053 - CA264_08160 0.52 -0.6
1,884,110 - CA264_08160 0.59 +1.2
1,884,117 - CA264_08160 0.60 -0.2
1,884,117 - CA264_08160 0.60 +0.2
1,884,132 - CA264_08160 0.61 -1.1
1,884,190 + CA264_08160 0.68 +0.4
1,884,368 + CA264_08160 0.88 -2.6
1,884,380 + CA264_08160 0.89 -0.8
1,884,380 + CA264_08160 0.89 -0.7
1,884,380 + CA264_08160 0.89 +1.5
1,884,381 - CA264_08160 0.89 +0.9
1,884,381 - CA264_08160 0.89 +1.5
1,884,401 + -0.3
1,884,460 + -0.4
1,884,461 - -1.1
1,884,476 - +0.2
1,884,476 - -0.5
1,884,482 - +0.3
1,884,489 - -0.2
1,884,489 - -0.4
1,884,493 + +0.2
1,884,493 + -0.8
1,884,551 - -0.6
1,884,555 - -0.4
1,884,555 - +0.2
1,884,555 - -0.4
1,884,650 + -1.1
1,884,680 + +0.6
1,884,734 + -0.2
1,884,795 - CA264_08165 0.10 -0.6
1,884,814 + CA264_08165 0.13 -0.0
1,884,814 + CA264_08165 0.13 -0.7
1,884,815 - CA264_08165 0.13 -1.4
1,885,022 - CA264_08165 0.39 +0.6
1,885,022 - CA264_08165 0.39 -0.0
1,885,034 + CA264_08165 0.41 -0.2
1,885,035 - CA264_08165 0.41 +1.0
1,885,035 - CA264_08165 0.41 -0.2
1,885,035 - CA264_08165 0.41 +0.6
1,885,099 - CA264_08165 0.49 +0.3
1,885,102 + CA264_08165 0.49 -0.1
1,885,240 + CA264_08165 0.67 -0.1
1,885,240 + CA264_08165 0.67 -0.1
1,885,240 + CA264_08165 0.67 -1.4
1,885,241 - CA264_08165 0.67 +0.3
1,885,291 + CA264_08165 0.73 +1.6
1,885,291 + CA264_08165 0.73 -0.2
1,885,335 + CA264_08165 0.79 +1.5

Or see this region's nucleotide sequence