Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06970

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06960 and CA264_06965 are separated by 138 nucleotidesCA264_06965 and CA264_06970 are separated by 23 nucleotidesCA264_06970 and CA264_06975 are separated by 223 nucleotidesCA264_06975 and CA264_06980 are separated by 11 nucleotides CA264_06960: CA264_06960 - NADH-quinone oxidoreductase subunit F, at 1,608,902 to 1,609,564 _06960 CA264_06965: CA264_06965 - organic hydroperoxide resistance protein, at 1,609,703 to 1,610,128 _06965 CA264_06970: CA264_06970 - MarR family transcriptional regulator, at 1,610,152 to 1,610,577 _06970 CA264_06975: CA264_06975 - phosphatase, at 1,610,801 to 1,611,451 _06975 CA264_06980: CA264_06980 - hypothetical protein, at 1,611,463 to 1,611,999 _06980 Position (kb) 1610 1611Strain fitness (log2 ratio) -2 -1 0 1at 1609.245 kb on + strand, within CA264_06960at 1609.245 kb on + strand, within CA264_06960at 1609.300 kb on - strand, within CA264_06960at 1609.300 kb on - strand, within CA264_06960at 1609.345 kb on + strand, within CA264_06960at 1609.345 kb on + strand, within CA264_06960at 1609.346 kb on - strand, within CA264_06960at 1609.346 kb on - strand, within CA264_06960at 1609.568 kb on + strandat 1609.569 kb on - strandat 1609.569 kb on - strandat 1609.573 kb on - strandat 1609.576 kb on + strandat 1609.577 kb on - strandat 1609.622 kb on + strandat 1609.681 kb on - strandat 1609.685 kb on - strandat 1609.686 kb on + strandat 1609.686 kb on + strandat 1609.687 kb on - strandat 1609.687 kb on - strandat 1609.687 kb on - strandat 1609.689 kb on + strandat 1609.690 kb on - strandat 1609.702 kb on - strandat 1609.704 kb on + strandat 1609.704 kb on + strandat 1609.705 kb on - strandat 1609.705 kb on - strandat 1609.713 kb on - strandat 1609.718 kb on - strandat 1609.718 kb on - strandat 1609.743 kb on - strandat 1609.774 kb on - strand, within CA264_06965at 1609.781 kb on + strand, within CA264_06965at 1609.781 kb on + strand, within CA264_06965at 1609.782 kb on - strand, within CA264_06965at 1609.799 kb on + strand, within CA264_06965at 1609.829 kb on + strand, within CA264_06965at 1609.868 kb on + strand, within CA264_06965at 1609.880 kb on - strand, within CA264_06965at 1609.880 kb on - strand, within CA264_06965at 1609.883 kb on + strand, within CA264_06965at 1609.883 kb on + strand, within CA264_06965at 1609.884 kb on - strand, within CA264_06965at 1609.884 kb on - strand, within CA264_06965at 1609.884 kb on - strand, within CA264_06965at 1609.884 kb on - strandat 1609.884 kb on - strand, within CA264_06965at 1609.900 kb on + strand, within CA264_06965at 1610.113 kb on + strandat 1610.113 kb on + strandat 1610.113 kb on + strandat 1610.114 kb on - strandat 1610.114 kb on - strandat 1610.115 kb on + strandat 1610.115 kb on + strandat 1610.116 kb on - strandat 1610.116 kb on - strandat 1610.116 kb on - strandat 1610.134 kb on - strandat 1610.188 kb on - strandat 1610.377 kb on + strand, within CA264_06970at 1610.398 kb on + strand, within CA264_06970at 1610.399 kb on - strand, within CA264_06970at 1610.471 kb on + strand, within CA264_06970at 1610.471 kb on + strand, within CA264_06970at 1610.476 kb on - strand, within CA264_06970at 1610.504 kb on + strand, within CA264_06970at 1610.542 kb on - strandat 1610.564 kb on - strandat 1610.665 kb on + strandat 1610.698 kb on + strandat 1610.699 kb on - strandat 1610.711 kb on + strandat 1610.711 kb on + strandat 1610.716 kb on + strandat 1610.716 kb on + strandat 1610.716 kb on + strandat 1610.716 kb on + strandat 1610.717 kb on - strandat 1610.717 kb on - strandat 1610.740 kb on + strandat 1610.741 kb on - strandat 1610.827 kb on + strandat 1610.827 kb on + strandat 1610.827 kb on + strandat 1610.827 kb on + strandat 1610.828 kb on - strandat 1611.077 kb on + strand, within CA264_06975at 1611.077 kb on + strand, within CA264_06975at 1611.098 kb on + strand, within CA264_06975at 1611.098 kb on + strand, within CA264_06975at 1611.098 kb on + strand, within CA264_06975at 1611.140 kb on - strand, within CA264_06975at 1611.183 kb on - strand, within CA264_06975at 1611.184 kb on + strand, within CA264_06975at 1611.184 kb on + strand, within CA264_06975at 1611.184 kb on - strand, within CA264_06975at 1611.185 kb on - strand, within CA264_06975at 1611.196 kb on + strand, within CA264_06975at 1611.196 kb on + strand, within CA264_06975at 1611.196 kb on + strand, within CA264_06975at 1611.216 kb on - strand, within CA264_06975at 1611.261 kb on - strand, within CA264_06975at 1611.309 kb on + strand, within CA264_06975at 1611.309 kb on + strand, within CA264_06975at 1611.309 kb on + strand, within CA264_06975at 1611.335 kb on - strand, within CA264_06975at 1611.478 kb on + strandat 1611.514 kb on + strandat 1611.515 kb on - strandat 1611.543 kb on + strand, within CA264_06980at 1611.548 kb on + strand, within CA264_06980at 1611.549 kb on - strand, within CA264_06980at 1611.572 kb on + strand, within CA264_06980at 1611.572 kb on + strand, within CA264_06980at 1611.573 kb on - strand, within CA264_06980at 1611.575 kb on + strand, within CA264_06980at 1611.576 kb on - strand, within CA264_06980

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,609,245 + CA264_06960 0.52 -0.0
1,609,245 + CA264_06960 0.52 -0.1
1,609,300 - CA264_06960 0.60 -0.1
1,609,300 - CA264_06960 0.60 -0.3
1,609,345 + CA264_06960 0.67 +0.0
1,609,345 + CA264_06960 0.67 -0.3
1,609,346 - CA264_06960 0.67 -0.1
1,609,346 - CA264_06960 0.67 +0.2
1,609,568 + +0.1
1,609,569 - +0.2
1,609,569 - -0.3
1,609,573 - -0.4
1,609,576 + +1.1
1,609,577 - -0.1
1,609,622 + -0.4
1,609,681 - -1.1
1,609,685 - -1.6
1,609,686 + -1.4
1,609,686 + -0.6
1,609,687 - +0.7
1,609,687 - +0.1
1,609,687 - +0.6
1,609,689 + -0.2
1,609,690 - -0.1
1,609,702 - -0.7
1,609,704 + -0.4
1,609,704 + -0.1
1,609,705 - -1.1
1,609,705 - -1.3
1,609,713 - -0.5
1,609,718 - +0.3
1,609,718 - +0.3
1,609,743 - +0.7
1,609,774 - CA264_06965 0.17 -0.8
1,609,781 + CA264_06965 0.18 -1.1
1,609,781 + CA264_06965 0.18 +1.5
1,609,782 - CA264_06965 0.19 +0.1
1,609,799 + CA264_06965 0.23 +0.5
1,609,829 + CA264_06965 0.30 +0.6
1,609,868 + CA264_06965 0.39 -0.2
1,609,880 - CA264_06965 0.42 -0.9
1,609,880 - CA264_06965 0.42 +0.2
1,609,883 + CA264_06965 0.42 +1.5
1,609,883 + CA264_06965 0.42 -0.2
1,609,884 - CA264_06965 0.42 -0.1
1,609,884 - CA264_06965 0.42 -1.6
1,609,884 - CA264_06965 0.42 +0.9
1,609,884 - +0.9
1,609,884 - CA264_06965 0.42 +0.3
1,609,900 + CA264_06965 0.46 +0.2
1,610,113 + -0.1
1,610,113 + -0.9
1,610,113 + +0.4
1,610,114 - -0.9
1,610,114 - -1.1
1,610,115 + -0.7
1,610,115 + -0.4
1,610,116 - -0.5
1,610,116 - +0.6
1,610,116 - -2.3
1,610,134 - +0.5
1,610,188 - -0.7
1,610,377 + CA264_06970 0.53 +1.0
1,610,398 + CA264_06970 0.58 -0.5
1,610,399 - CA264_06970 0.58 -0.1
1,610,471 + CA264_06970 0.75 +0.7
1,610,471 + CA264_06970 0.75 +0.1
1,610,476 - CA264_06970 0.76 -0.1
1,610,504 + CA264_06970 0.83 -1.0
1,610,542 - -0.1
1,610,564 - +0.2
1,610,665 + -0.5
1,610,698 + +0.8
1,610,699 - -0.6
1,610,711 + +0.1
1,610,711 + -0.2
1,610,716 + +0.5
1,610,716 + -0.1
1,610,716 + -0.8
1,610,716 + -0.7
1,610,717 - -0.3
1,610,717 - +0.6
1,610,740 + -1.9
1,610,741 - -1.5
1,610,827 + +0.3
1,610,827 + -0.1
1,610,827 + +0.3
1,610,827 + -0.1
1,610,828 - -0.3
1,611,077 + CA264_06975 0.42 -0.1
1,611,077 + CA264_06975 0.42 +0.1
1,611,098 + CA264_06975 0.46 -0.7
1,611,098 + CA264_06975 0.46 +1.3
1,611,098 + CA264_06975 0.46 -1.9
1,611,140 - CA264_06975 0.52 +0.3
1,611,183 - CA264_06975 0.59 -1.4
1,611,184 + CA264_06975 0.59 -0.2
1,611,184 + CA264_06975 0.59 +1.5
1,611,184 - CA264_06975 0.59 +0.3
1,611,185 - CA264_06975 0.59 +0.9
1,611,196 + CA264_06975 0.61 +1.4
1,611,196 + CA264_06975 0.61 -1.1
1,611,196 + CA264_06975 0.61 -0.4
1,611,216 - CA264_06975 0.64 +0.4
1,611,261 - CA264_06975 0.71 -0.3
1,611,309 + CA264_06975 0.78 +0.9
1,611,309 + CA264_06975 0.78 -0.1
1,611,309 + CA264_06975 0.78 +0.2
1,611,335 - CA264_06975 0.82 -0.5
1,611,478 + -0.4
1,611,514 + -0.7
1,611,515 - -0.6
1,611,543 + CA264_06980 0.15 +0.0
1,611,548 + CA264_06980 0.16 +0.9
1,611,549 - CA264_06980 0.16 -0.1
1,611,572 + CA264_06980 0.20 +1.5
1,611,572 + CA264_06980 0.20 -0.7
1,611,573 - CA264_06980 0.20 -1.1
1,611,575 + CA264_06980 0.21 -0.8
1,611,576 - CA264_06980 0.21 -1.0

Or see this region's nucleotide sequence