Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05800

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05790 and CA264_05795 are separated by 214 nucleotidesCA264_05795 and CA264_05800 are separated by 271 nucleotidesCA264_05800 and CA264_05805 are separated by 48 nucleotides CA264_05790: CA264_05790 - heavy metal translocating P-type ATPase, at 1,347,489 to 1,349,894 _05790 CA264_05795: CA264_05795 - hypothetical protein, at 1,350,109 to 1,350,561 _05795 CA264_05800: CA264_05800 - hypothetical protein, at 1,350,833 to 1,351,381 _05800 CA264_05805: CA264_05805 - hypothetical protein, at 1,351,430 to 1,353,190 _05805 Position (kb) 1350 1351 1352Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1349.908 kb on + strandat 1349.978 kb on - strandat 1349.978 kb on - strandat 1349.992 kb on + strandat 1350.003 kb on + strandat 1350.102 kb on - strandat 1350.116 kb on + strandat 1350.132 kb on - strandat 1350.155 kb on + strand, within CA264_05795at 1350.404 kb on + strand, within CA264_05795at 1350.404 kb on + strand, within CA264_05795at 1350.404 kb on + strand, within CA264_05795at 1350.404 kb on + strand, within CA264_05795at 1350.405 kb on - strand, within CA264_05795at 1350.405 kb on - strand, within CA264_05795at 1350.448 kb on + strand, within CA264_05795at 1350.448 kb on + strand, within CA264_05795at 1350.449 kb on - strand, within CA264_05795at 1350.464 kb on + strand, within CA264_05795at 1350.464 kb on + strand, within CA264_05795at 1350.487 kb on - strand, within CA264_05795at 1350.537 kb on - strandat 1350.537 kb on - strandat 1350.560 kb on - strandat 1350.560 kb on - strandat 1350.560 kb on - strandat 1350.568 kb on - strandat 1350.570 kb on - strandat 1350.570 kb on - strandat 1350.570 kb on - strandat 1350.579 kb on + strandat 1350.579 kb on + strandat 1350.580 kb on - strandat 1350.590 kb on + strandat 1350.605 kb on + strandat 1350.641 kb on - strandat 1350.644 kb on + strandat 1350.645 kb on - strandat 1350.820 kb on + strandat 1350.820 kb on + strandat 1350.820 kb on + strandat 1350.821 kb on - strandat 1350.824 kb on - strandat 1350.824 kb on - strandat 1350.824 kb on - strandat 1350.825 kb on + strandat 1350.825 kb on + strandat 1350.840 kb on - strandat 1350.996 kb on + strand, within CA264_05800at 1350.997 kb on - strand, within CA264_05800at 1350.997 kb on - strand, within CA264_05800at 1351.043 kb on - strand, within CA264_05800at 1351.092 kb on - strand, within CA264_05800at 1351.112 kb on + strand, within CA264_05800at 1351.137 kb on - strand, within CA264_05800at 1351.193 kb on + strand, within CA264_05800at 1351.193 kb on + strand, within CA264_05800at 1351.194 kb on - strand, within CA264_05800at 1351.208 kb on + strand, within CA264_05800at 1351.209 kb on - strand, within CA264_05800at 1351.287 kb on - strand, within CA264_05800at 1351.359 kb on - strandat 1351.398 kb on - strandat 1351.470 kb on + strandat 1351.474 kb on + strandat 1351.475 kb on - strandat 1351.519 kb on + strandat 1351.524 kb on + strandat 1351.533 kb on + strandat 1351.533 kb on + strandat 1351.534 kb on - strandat 1351.542 kb on - strandat 1351.559 kb on - strandat 1351.588 kb on + strandat 1351.635 kb on + strand, within CA264_05805at 1351.735 kb on - strand, within CA264_05805at 1351.735 kb on - strand, within CA264_05805at 1351.847 kb on - strand, within CA264_05805at 1351.963 kb on + strand, within CA264_05805at 1351.984 kb on - strand, within CA264_05805at 1352.001 kb on + strand, within CA264_05805at 1352.001 kb on + strand, within CA264_05805at 1352.054 kb on - strand, within CA264_05805at 1352.118 kb on + strand, within CA264_05805at 1352.118 kb on + strand, within CA264_05805at 1352.118 kb on + strand, within CA264_05805at 1352.119 kb on - strand, within CA264_05805at 1352.119 kb on - strand, within CA264_05805at 1352.124 kb on + strand, within CA264_05805at 1352.125 kb on - strand, within CA264_05805at 1352.131 kb on + strand, within CA264_05805

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,349,908 + +0.3
1,349,978 - +0.9
1,349,978 - -0.4
1,349,992 + -0.4
1,350,003 + -0.7
1,350,102 - +0.6
1,350,116 + -0.4
1,350,132 - -0.9
1,350,155 + CA264_05795 0.10 -0.5
1,350,404 + CA264_05795 0.65 -0.1
1,350,404 + CA264_05795 0.65 -0.6
1,350,404 + CA264_05795 0.65 +1.5
1,350,404 + CA264_05795 0.65 +2.9
1,350,405 - CA264_05795 0.65 -0.4
1,350,405 - CA264_05795 0.65 +0.5
1,350,448 + CA264_05795 0.75 +1.6
1,350,448 + CA264_05795 0.75 -2.1
1,350,449 - CA264_05795 0.75 -0.8
1,350,464 + CA264_05795 0.78 -2.1
1,350,464 + CA264_05795 0.78 -0.6
1,350,487 - CA264_05795 0.83 -1.7
1,350,537 - +0.7
1,350,537 - -2.4
1,350,560 - +0.3
1,350,560 - -0.1
1,350,560 - -0.4
1,350,568 - -1.4
1,350,570 - +0.1
1,350,570 - -0.0
1,350,570 - +0.9
1,350,579 + -0.4
1,350,579 + +0.1
1,350,580 - -0.1
1,350,590 + -1.0
1,350,605 + +0.6
1,350,641 - +0.1
1,350,644 + +0.9
1,350,645 - -1.1
1,350,820 + -0.2
1,350,820 + +0.3
1,350,820 + -0.3
1,350,821 - -0.6
1,350,824 - -0.1
1,350,824 - -0.5
1,350,824 - +0.2
1,350,825 + +0.9
1,350,825 + -1.9
1,350,840 - -1.4
1,350,996 + CA264_05800 0.30 +0.3
1,350,997 - CA264_05800 0.30 -1.0
1,350,997 - CA264_05800 0.30 -0.3
1,351,043 - CA264_05800 0.38 +0.1
1,351,092 - CA264_05800 0.47 -0.8
1,351,112 + CA264_05800 0.51 +1.9
1,351,137 - CA264_05800 0.55 +0.6
1,351,193 + CA264_05800 0.66 -0.4
1,351,193 + CA264_05800 0.66 +2.2
1,351,194 - CA264_05800 0.66 -2.0
1,351,208 + CA264_05800 0.68 -0.4
1,351,209 - CA264_05800 0.68 -1.5
1,351,287 - CA264_05800 0.83 -0.6
1,351,359 - -0.4
1,351,398 - -0.5
1,351,470 + +0.2
1,351,474 + -0.9
1,351,475 - +3.5
1,351,519 + -0.9
1,351,524 + +0.2
1,351,533 + -1.1
1,351,533 + -0.1
1,351,534 - -0.1
1,351,542 - -0.1
1,351,559 - +0.5
1,351,588 + -0.8
1,351,635 + CA264_05805 0.12 +0.6
1,351,735 - CA264_05805 0.17 -0.7
1,351,735 - CA264_05805 0.17 -1.1
1,351,847 - CA264_05805 0.24 +0.7
1,351,963 + CA264_05805 0.30 +0.6
1,351,984 - CA264_05805 0.31 -0.1
1,352,001 + CA264_05805 0.32 -0.0
1,352,001 + CA264_05805 0.32 -1.3
1,352,054 - CA264_05805 0.35 -0.2
1,352,118 + CA264_05805 0.39 -0.9
1,352,118 + CA264_05805 0.39 +0.6
1,352,118 + CA264_05805 0.39 -1.1
1,352,119 - CA264_05805 0.39 -1.1
1,352,119 - CA264_05805 0.39 +0.7
1,352,124 + CA264_05805 0.39 -0.1
1,352,125 - CA264_05805 0.39 -0.7
1,352,131 + CA264_05805 0.40 -0.3

Or see this region's nucleotide sequence