Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05440

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05430 and CA264_05435 are separated by 145 nucleotidesCA264_05435 and CA264_05440 are separated by 99 nucleotidesCA264_05440 and CA264_05445 are separated by 319 nucleotidesCA264_05445 and CA264_05450 are separated by 81 nucleotides CA264_05430: CA264_05430 - general stress protein, at 1,261,245 to 1,261,745 _05430 CA264_05435: CA264_05435 - hypothetical protein, at 1,261,891 to 1,262,475 _05435 CA264_05440: CA264_05440 - glucose-fructose oxidoreductase, at 1,262,575 to 1,263,744 _05440 CA264_05445: CA264_05445 - peptidylprolyl isomerase, at 1,264,064 to 1,264,576 _05445 CA264_05450: CA264_05450 - DNA-binding protein, at 1,264,658 to 1,266,601 _05450 Position (kb) 1262 1263 1264Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1261.577 kb on - strand, within CA264_05430at 1261.683 kb on + strand, within CA264_05430at 1261.683 kb on + strand, within CA264_05430at 1261.697 kb on + strandat 1261.697 kb on + strandat 1261.698 kb on - strandat 1261.698 kb on - strandat 1261.702 kb on - strandat 1261.745 kb on + strandat 1261.753 kb on + strandat 1261.772 kb on + strandat 1261.797 kb on - strandat 1261.799 kb on - strandat 1261.990 kb on + strand, within CA264_05435at 1261.990 kb on + strand, within CA264_05435at 1261.990 kb on + strand, within CA264_05435at 1262.096 kb on - strand, within CA264_05435at 1262.128 kb on + strand, within CA264_05435at 1262.128 kb on + strand, within CA264_05435at 1262.128 kb on + strand, within CA264_05435at 1262.131 kb on + strand, within CA264_05435at 1262.131 kb on + strand, within CA264_05435at 1262.132 kb on - strand, within CA264_05435at 1262.162 kb on + strand, within CA264_05435at 1262.162 kb on + strand, within CA264_05435at 1262.163 kb on - strand, within CA264_05435at 1262.163 kb on - strand, within CA264_05435at 1262.165 kb on - strand, within CA264_05435at 1262.165 kb on - strand, within CA264_05435at 1262.203 kb on + strand, within CA264_05435at 1262.203 kb on + strand, within CA264_05435at 1262.210 kb on + strand, within CA264_05435at 1262.211 kb on - strand, within CA264_05435at 1262.253 kb on + strand, within CA264_05435at 1262.264 kb on - strand, within CA264_05435at 1262.294 kb on - strand, within CA264_05435at 1262.447 kb on - strandat 1262.488 kb on - strandat 1262.509 kb on - strandat 1262.540 kb on + strandat 1262.547 kb on - strandat 1262.564 kb on - strandat 1262.564 kb on - strandat 1262.591 kb on - strandat 1262.610 kb on + strandat 1262.782 kb on + strand, within CA264_05440at 1262.887 kb on + strand, within CA264_05440at 1262.911 kb on + strand, within CA264_05440at 1262.911 kb on + strand, within CA264_05440at 1262.912 kb on - strand, within CA264_05440at 1262.912 kb on - strand, within CA264_05440at 1262.918 kb on - strand, within CA264_05440at 1262.918 kb on - strand, within CA264_05440at 1262.927 kb on - strand, within CA264_05440at 1262.958 kb on + strand, within CA264_05440at 1262.961 kb on + strand, within CA264_05440at 1262.962 kb on - strand, within CA264_05440at 1262.962 kb on - strand, within CA264_05440at 1262.962 kb on - strand, within CA264_05440at 1263.000 kb on + strand, within CA264_05440at 1263.054 kb on + strand, within CA264_05440at 1263.184 kb on + strand, within CA264_05440at 1263.204 kb on - strand, within CA264_05440at 1263.244 kb on - strand, within CA264_05440at 1263.301 kb on + strand, within CA264_05440at 1263.301 kb on + strand, within CA264_05440at 1263.301 kb on + strand, within CA264_05440at 1263.302 kb on - strand, within CA264_05440at 1263.322 kb on + strand, within CA264_05440at 1263.323 kb on - strand, within CA264_05440at 1263.323 kb on - strand, within CA264_05440at 1263.488 kb on - strand, within CA264_05440at 1263.488 kb on - strand, within CA264_05440at 1263.530 kb on - strand, within CA264_05440at 1263.735 kb on - strandat 1263.735 kb on - strandat 1263.752 kb on + strandat 1263.755 kb on - strandat 1263.812 kb on - strandat 1263.923 kb on + strandat 1263.923 kb on + strandat 1263.924 kb on - strandat 1263.934 kb on + strandat 1263.972 kb on - strandat 1264.000 kb on + strandat 1264.042 kb on + strandat 1264.058 kb on + strandat 1264.065 kb on + strandat 1264.155 kb on + strand, within CA264_05445at 1264.157 kb on + strand, within CA264_05445at 1264.220 kb on + strand, within CA264_05445at 1264.259 kb on - strand, within CA264_05445at 1264.266 kb on + strand, within CA264_05445at 1264.266 kb on + strand, within CA264_05445at 1264.266 kb on + strand, within CA264_05445at 1264.267 kb on - strand, within CA264_05445at 1264.458 kb on + strand, within CA264_05445at 1264.462 kb on + strand, within CA264_05445at 1264.462 kb on + strand, within CA264_05445at 1264.462 kb on + strand, within CA264_05445at 1264.549 kb on + strandat 1264.550 kb on - strandat 1264.550 kb on - strandat 1264.553 kb on + strandat 1264.659 kb on + strandat 1264.703 kb on + strandat 1264.704 kb on - strandat 1264.705 kb on + strandat 1264.705 kb on + strandat 1264.706 kb on - strandat 1264.713 kb on - strandat 1264.735 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,261,577 - CA264_05430 0.66 +0.5
1,261,683 + CA264_05430 0.87 -1.4
1,261,683 + CA264_05430 0.87 -0.1
1,261,697 + +0.6
1,261,697 + -0.5
1,261,698 - -0.0
1,261,698 - +1.9
1,261,702 - -0.6
1,261,745 + -1.1
1,261,753 + +0.2
1,261,772 + -0.7
1,261,797 - -0.1
1,261,799 - +1.1
1,261,990 + CA264_05435 0.17 +0.1
1,261,990 + CA264_05435 0.17 -0.7
1,261,990 + CA264_05435 0.17 -2.3
1,262,096 - CA264_05435 0.35 +0.8
1,262,128 + CA264_05435 0.41 +0.0
1,262,128 + CA264_05435 0.41 -0.6
1,262,128 + CA264_05435 0.41 -0.3
1,262,131 + CA264_05435 0.41 -1.0
1,262,131 + CA264_05435 0.41 +1.5
1,262,132 - CA264_05435 0.41 +0.0
1,262,162 + CA264_05435 0.46 -0.9
1,262,162 + CA264_05435 0.46 +0.4
1,262,163 - CA264_05435 0.46 -0.3
1,262,163 - CA264_05435 0.46 -0.1
1,262,165 - CA264_05435 0.47 -0.3
1,262,165 - CA264_05435 0.47 -0.5
1,262,203 + CA264_05435 0.53 -0.3
1,262,203 + CA264_05435 0.53 -0.3
1,262,210 + CA264_05435 0.55 -0.5
1,262,211 - CA264_05435 0.55 +0.2
1,262,253 + CA264_05435 0.62 -1.2
1,262,264 - CA264_05435 0.64 +0.2
1,262,294 - CA264_05435 0.69 -0.2
1,262,447 - +0.4
1,262,488 - -0.1
1,262,509 - +1.1
1,262,540 + +0.9
1,262,547 - +0.6
1,262,564 - +1.9
1,262,564 - +0.1
1,262,591 - +0.8
1,262,610 + -0.7
1,262,782 + CA264_05440 0.18 -0.9
1,262,887 + CA264_05440 0.27 +0.3
1,262,911 + CA264_05440 0.29 -0.4
1,262,911 + CA264_05440 0.29 -2.9
1,262,912 - CA264_05440 0.29 -0.7
1,262,912 - CA264_05440 0.29 -1.7
1,262,918 - CA264_05440 0.29 -0.7
1,262,918 - CA264_05440 0.29 +0.3
1,262,927 - CA264_05440 0.30 +0.0
1,262,958 + CA264_05440 0.33 +0.2
1,262,961 + CA264_05440 0.33 -1.8
1,262,962 - CA264_05440 0.33 -0.4
1,262,962 - CA264_05440 0.33 +0.3
1,262,962 - CA264_05440 0.33 -2.3
1,263,000 + CA264_05440 0.36 +0.5
1,263,054 + CA264_05440 0.41 +0.5
1,263,184 + CA264_05440 0.52 -0.3
1,263,204 - CA264_05440 0.54 -0.1
1,263,244 - CA264_05440 0.57 -0.1
1,263,301 + CA264_05440 0.62 +2.1
1,263,301 + CA264_05440 0.62 -0.1
1,263,301 + CA264_05440 0.62 -0.3
1,263,302 - CA264_05440 0.62 -0.5
1,263,322 + CA264_05440 0.64 +0.4
1,263,323 - CA264_05440 0.64 -0.8
1,263,323 - CA264_05440 0.64 -1.1
1,263,488 - CA264_05440 0.78 +0.9
1,263,488 - CA264_05440 0.78 +0.1
1,263,530 - CA264_05440 0.82 +0.9
1,263,735 - -0.7
1,263,735 - -2.8
1,263,752 + -0.2
1,263,755 - -0.5
1,263,812 - -1.3
1,263,923 + +1.2
1,263,923 + -1.7
1,263,924 - +0.4
1,263,934 + -0.1
1,263,972 - -0.0
1,264,000 + -0.4
1,264,042 + -0.9
1,264,058 + -0.0
1,264,065 + +0.3
1,264,155 + CA264_05445 0.18 +0.5
1,264,157 + CA264_05445 0.18 -0.4
1,264,220 + CA264_05445 0.30 -0.1
1,264,259 - CA264_05445 0.38 +0.2
1,264,266 + CA264_05445 0.39 -0.3
1,264,266 + CA264_05445 0.39 -0.3
1,264,266 + CA264_05445 0.39 -0.5
1,264,267 - CA264_05445 0.40 +0.4
1,264,458 + CA264_05445 0.77 -0.3
1,264,462 + CA264_05445 0.78 -0.5
1,264,462 + CA264_05445 0.78 -0.1
1,264,462 + CA264_05445 0.78 -0.1
1,264,549 + -0.8
1,264,550 - -0.7
1,264,550 - +0.8
1,264,553 + +0.4
1,264,659 + -0.8
1,264,703 + +0.1
1,264,704 - -0.7
1,264,705 + -0.3
1,264,705 + +1.6
1,264,706 - -0.4
1,264,713 - -0.6
1,264,735 - -0.6

Or see this region's nucleotide sequence