Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03225

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03220 and CA264_03225 are separated by 102 nucleotidesCA264_03225 and CA264_03230 are separated by 77 nucleotides CA264_03220: CA264_03220 - hypothetical protein, at 758,081 to 758,713 _03220 CA264_03225: CA264_03225 - hypothetical protein, at 758,816 to 760,012 _03225 CA264_03230: CA264_03230 - hypothetical protein, at 760,090 to 761,394 _03230 Position (kb) 758 759 760 761Strain fitness (log2 ratio) -2 -1 0 1 2at 757.859 kb on - strandat 757.859 kb on - strandat 757.886 kb on + strandat 757.897 kb on + strandat 757.907 kb on + strandat 757.907 kb on + strandat 757.908 kb on - strandat 758.082 kb on + strandat 758.083 kb on - strandat 758.083 kb on - strandat 758.083 kb on - strandat 758.211 kb on + strand, within CA264_03220at 758.212 kb on - strand, within CA264_03220at 758.215 kb on - strand, within CA264_03220at 758.365 kb on - strand, within CA264_03220at 758.495 kb on + strand, within CA264_03220at 758.495 kb on + strand, within CA264_03220at 758.495 kb on + strand, within CA264_03220at 758.539 kb on + strand, within CA264_03220at 758.540 kb on - strand, within CA264_03220at 758.628 kb on - strand, within CA264_03220at 758.665 kb on + strandat 758.720 kb on + strandat 758.730 kb on + strandat 758.741 kb on + strandat 758.742 kb on - strandat 758.824 kb on + strandat 758.871 kb on + strandat 758.880 kb on + strandat 759.108 kb on + strand, within CA264_03225at 759.144 kb on - strand, within CA264_03225at 759.144 kb on - strand, within CA264_03225at 759.346 kb on - strand, within CA264_03225at 759.377 kb on + strand, within CA264_03225at 759.377 kb on + strand, within CA264_03225at 759.377 kb on + strand, within CA264_03225at 759.377 kb on + strand, within CA264_03225at 759.395 kb on + strand, within CA264_03225at 759.403 kb on + strand, within CA264_03225at 759.569 kb on + strand, within CA264_03225at 759.683 kb on + strand, within CA264_03225at 759.684 kb on - strand, within CA264_03225at 759.914 kb on - strandat 759.915 kb on + strandat 759.915 kb on + strandat 759.915 kb on + strandat 759.915 kb on + strandat 759.916 kb on - strandat 759.993 kb on - strandat 760.054 kb on + strandat 760.099 kb on + strandat 760.128 kb on + strandat 760.248 kb on + strand, within CA264_03230at 760.317 kb on + strand, within CA264_03230at 760.317 kb on + strand, within CA264_03230at 760.319 kb on + strand, within CA264_03230at 760.319 kb on + strand, within CA264_03230at 760.320 kb on - strand, within CA264_03230at 760.387 kb on + strand, within CA264_03230at 760.387 kb on + strand, within CA264_03230at 760.436 kb on - strand, within CA264_03230at 760.592 kb on + strand, within CA264_03230at 760.592 kb on + strand, within CA264_03230at 760.708 kb on - strand, within CA264_03230at 760.763 kb on + strand, within CA264_03230at 760.764 kb on - strand, within CA264_03230at 760.772 kb on + strand, within CA264_03230at 760.781 kb on + strand, within CA264_03230at 760.781 kb on + strand, within CA264_03230at 760.782 kb on - strand, within CA264_03230at 760.785 kb on + strand, within CA264_03230at 760.786 kb on - strand, within CA264_03230at 760.797 kb on - strand, within CA264_03230at 760.890 kb on + strand, within CA264_03230at 760.917 kb on - strand, within CA264_03230at 760.956 kb on - strand, within CA264_03230at 760.994 kb on + strand, within CA264_03230at 760.998 kb on + strand, within CA264_03230at 760.998 kb on + strand, within CA264_03230at 760.998 kb on + strand, within CA264_03230at 760.999 kb on - strand, within CA264_03230

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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757,859 - +2.6
757,859 - +0.5
757,886 + -0.1
757,897 + -0.1
757,907 + -1.5
757,907 + -0.2
757,908 - -0.2
758,082 + +0.3
758,083 - -0.4
758,083 - -0.7
758,083 - +0.2
758,211 + CA264_03220 0.21 -0.6
758,212 - CA264_03220 0.21 +0.3
758,215 - CA264_03220 0.21 -1.7
758,365 - CA264_03220 0.45 -0.8
758,495 + CA264_03220 0.65 -0.3
758,495 + CA264_03220 0.65 +0.3
758,495 + CA264_03220 0.65 +1.6
758,539 + CA264_03220 0.72 -0.3
758,540 - CA264_03220 0.73 -0.0
758,628 - CA264_03220 0.86 -0.4
758,665 + -0.6
758,720 + -0.1
758,730 + +0.7
758,741 + -0.6
758,742 - +1.0
758,824 + +1.0
758,871 + -0.4
758,880 + -0.5
759,108 + CA264_03225 0.24 +1.0
759,144 - CA264_03225 0.27 -1.6
759,144 - CA264_03225 0.27 -1.0
759,346 - CA264_03225 0.44 -0.6
759,377 + CA264_03225 0.47 -0.4
759,377 + CA264_03225 0.47 -0.6
759,377 + CA264_03225 0.47 -0.8
759,377 + CA264_03225 0.47 -0.0
759,395 + CA264_03225 0.48 -1.3
759,403 + CA264_03225 0.49 -0.6
759,569 + CA264_03225 0.63 -0.0
759,683 + CA264_03225 0.72 +2.6
759,684 - CA264_03225 0.73 -0.3
759,914 - -0.3
759,915 + -0.3
759,915 + +0.1
759,915 + -0.3
759,915 + -0.3
759,916 - -0.5
759,993 - -1.0
760,054 + -0.4
760,099 + -0.7
760,128 + +0.6
760,248 + CA264_03230 0.12 -0.2
760,317 + CA264_03230 0.17 -1.0
760,317 + CA264_03230 0.17 +0.5
760,319 + CA264_03230 0.18 +1.0
760,319 + CA264_03230 0.18 +1.0
760,320 - CA264_03230 0.18 -0.5
760,387 + CA264_03230 0.23 -1.0
760,387 + CA264_03230 0.23 +0.1
760,436 - CA264_03230 0.27 +0.2
760,592 + CA264_03230 0.38 -0.4
760,592 + CA264_03230 0.38 -0.1
760,708 - CA264_03230 0.47 +0.4
760,763 + CA264_03230 0.52 -0.6
760,764 - CA264_03230 0.52 -0.6
760,772 + CA264_03230 0.52 -0.0
760,781 + CA264_03230 0.53 -0.5
760,781 + CA264_03230 0.53 -0.0
760,782 - CA264_03230 0.53 -2.7
760,785 + CA264_03230 0.53 +1.6
760,786 - CA264_03230 0.53 -0.0
760,797 - CA264_03230 0.54 +0.2
760,890 + CA264_03230 0.61 +1.0
760,917 - CA264_03230 0.63 +1.6
760,956 - CA264_03230 0.66 +0.3
760,994 + CA264_03230 0.69 +0.4
760,998 + CA264_03230 0.70 +1.0
760,998 + CA264_03230 0.70 -0.4
760,998 + CA264_03230 0.70 -1.9
760,999 - CA264_03230 0.70 +1.0

Or see this region's nucleotide sequence