Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02240

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02230 and CA264_02235 are separated by 40 nucleotidesCA264_02235 and CA264_02240 overlap by 1 nucleotidesCA264_02240 and CA264_02245 are separated by 210 nucleotides CA264_02230: CA264_02230 - hypothetical protein, at 514,317 to 515,225 _02230 CA264_02235: CA264_02235 - hypothetical protein, at 515,266 to 516,081 _02235 CA264_02240: CA264_02240 - TonB-dependent receptor, at 516,081 to 518,411 _02240 CA264_02245: CA264_02245 - hypothetical protein, at 518,622 to 519,974 _02245 Position (kb) 516 517 518 519Strain fitness (log2 ratio) -2 -1 0 1 2 3at 515.084 kb on - strand, within CA264_02230at 515.106 kb on - strand, within CA264_02230at 515.112 kb on - strand, within CA264_02230at 515.188 kb on + strandat 515.191 kb on - strandat 515.267 kb on + strandat 515.332 kb on + strandat 515.345 kb on - strandat 515.436 kb on - strand, within CA264_02235at 515.436 kb on - strand, within CA264_02235at 515.436 kb on - strand, within CA264_02235at 515.444 kb on - strand, within CA264_02235at 515.444 kb on - strand, within CA264_02235at 515.444 kb on - strand, within CA264_02235at 515.469 kb on - strand, within CA264_02235at 515.473 kb on - strand, within CA264_02235at 515.487 kb on - strand, within CA264_02235at 515.493 kb on + strand, within CA264_02235at 515.493 kb on + strand, within CA264_02235at 515.499 kb on + strand, within CA264_02235at 515.509 kb on - strand, within CA264_02235at 515.509 kb on - strand, within CA264_02235at 515.582 kb on + strand, within CA264_02235at 515.583 kb on - strand, within CA264_02235at 515.583 kb on - strand, within CA264_02235at 515.738 kb on + strand, within CA264_02235at 515.739 kb on - strand, within CA264_02235at 515.779 kb on - strand, within CA264_02235at 515.779 kb on - strand, within CA264_02235at 515.786 kb on + strand, within CA264_02235at 515.787 kb on - strand, within CA264_02235at 515.858 kb on + strand, within CA264_02235at 515.859 kb on - strand, within CA264_02235at 515.859 kb on - strand, within CA264_02235at 515.859 kb on - strand, within CA264_02235at 515.859 kb on - strand, within CA264_02235at 515.969 kb on - strand, within CA264_02235at 516.050 kb on - strandat 516.061 kb on + strandat 516.062 kb on - strandat 516.089 kb on + strandat 516.095 kb on + strandat 516.095 kb on + strandat 516.095 kb on + strandat 516.096 kb on - strandat 516.096 kb on - strandat 516.097 kb on + strandat 516.098 kb on - strandat 516.217 kb on + strandat 516.217 kb on + strandat 516.218 kb on - strandat 516.226 kb on + strandat 516.227 kb on - strandat 516.285 kb on + strandat 516.338 kb on + strand, within CA264_02240at 516.338 kb on + strand, within CA264_02240at 516.339 kb on - strand, within CA264_02240at 516.584 kb on - strand, within CA264_02240at 516.584 kb on - strand, within CA264_02240at 516.612 kb on + strand, within CA264_02240at 516.625 kb on + strand, within CA264_02240at 516.626 kb on - strand, within CA264_02240at 516.640 kb on + strand, within CA264_02240at 516.641 kb on - strand, within CA264_02240at 516.739 kb on + strand, within CA264_02240at 516.739 kb on + strand, within CA264_02240at 516.743 kb on - strand, within CA264_02240at 516.763 kb on + strand, within CA264_02240at 516.791 kb on - strand, within CA264_02240at 516.825 kb on + strand, within CA264_02240at 516.826 kb on - strand, within CA264_02240at 516.913 kb on + strand, within CA264_02240at 516.913 kb on + strand, within CA264_02240at 516.923 kb on + strand, within CA264_02240at 516.948 kb on - strand, within CA264_02240at 516.950 kb on - strand, within CA264_02240at 517.029 kb on - strand, within CA264_02240at 517.047 kb on + strand, within CA264_02240at 517.055 kb on - strand, within CA264_02240at 517.055 kb on - strand, within CA264_02240at 517.069 kb on + strand, within CA264_02240at 517.069 kb on + strand, within CA264_02240at 517.070 kb on - strand, within CA264_02240at 517.070 kb on - strand, within CA264_02240at 517.070 kb on - strand, within CA264_02240at 517.070 kb on - strand, within CA264_02240at 517.162 kb on + strand, within CA264_02240at 517.163 kb on - strand, within CA264_02240at 517.221 kb on + strand, within CA264_02240at 517.221 kb on + strand, within CA264_02240at 517.238 kb on + strand, within CA264_02240at 517.239 kb on - strand, within CA264_02240at 517.298 kb on + strand, within CA264_02240at 517.298 kb on + strand, within CA264_02240at 517.299 kb on - strand, within CA264_02240at 517.299 kb on - strand, within CA264_02240at 517.300 kb on + strand, within CA264_02240at 517.444 kb on + strand, within CA264_02240at 517.445 kb on - strand, within CA264_02240at 517.445 kb on - strand, within CA264_02240at 517.517 kb on - strand, within CA264_02240at 517.578 kb on - strand, within CA264_02240at 517.637 kb on + strand, within CA264_02240at 517.638 kb on - strand, within CA264_02240at 517.648 kb on - strand, within CA264_02240at 517.653 kb on - strand, within CA264_02240at 517.669 kb on - strand, within CA264_02240at 517.703 kb on + strand, within CA264_02240at 517.722 kb on + strand, within CA264_02240at 518.025 kb on + strand, within CA264_02240at 518.047 kb on - strand, within CA264_02240at 518.170 kb on + strand, within CA264_02240at 518.179 kb on + strandat 518.180 kb on - strandat 518.332 kb on - strandat 518.447 kb on - strandat 518.447 kb on - strandat 518.493 kb on + strandat 518.510 kb on + strandat 518.511 kb on - strandat 518.541 kb on - strandat 518.587 kb on - strandat 518.589 kb on + strandat 518.590 kb on - strandat 518.623 kb on + strandat 518.632 kb on + strandat 518.632 kb on + strandat 518.660 kb on - strandat 518.816 kb on + strand, within CA264_02245at 518.893 kb on + strand, within CA264_02245at 518.893 kb on + strand, within CA264_02245at 518.893 kb on + strand, within CA264_02245at 518.992 kb on - strand, within CA264_02245at 519.080 kb on - strand, within CA264_02245at 519.280 kb on + strand, within CA264_02245at 519.338 kb on - strand, within CA264_02245at 519.338 kb on - strand, within CA264_02245at 519.356 kb on + strand, within CA264_02245at 519.356 kb on + strand, within CA264_02245

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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515,084 - CA264_02230 0.84 +0.0
515,106 - CA264_02230 0.87 +0.6
515,112 - CA264_02230 0.87 +0.2
515,188 + +0.5
515,191 - -0.4
515,267 + +0.8
515,332 + -0.5
515,345 - +0.3
515,436 - CA264_02235 0.21 -0.5
515,436 - CA264_02235 0.21 +1.0
515,436 - CA264_02235 0.21 -1.4
515,444 - CA264_02235 0.22 +0.4
515,444 - CA264_02235 0.22 -0.6
515,444 - CA264_02235 0.22 +0.3
515,469 - CA264_02235 0.25 +1.2
515,473 - CA264_02235 0.25 -1.6
515,487 - CA264_02235 0.27 -1.2
515,493 + CA264_02235 0.28 -2.0
515,493 + CA264_02235 0.28 +0.8
515,499 + CA264_02235 0.29 -0.9
515,509 - CA264_02235 0.30 +0.1
515,509 - CA264_02235 0.30 -1.1
515,582 + CA264_02235 0.39 -1.1
515,583 - CA264_02235 0.39 +0.0
515,583 - CA264_02235 0.39 +1.7
515,738 + CA264_02235 0.58 -0.5
515,739 - CA264_02235 0.58 +0.3
515,779 - CA264_02235 0.63 +2.4
515,779 - CA264_02235 0.63 -0.5
515,786 + CA264_02235 0.64 -0.9
515,787 - CA264_02235 0.64 -0.1
515,858 + CA264_02235 0.73 -0.2
515,859 - CA264_02235 0.73 -1.0
515,859 - CA264_02235 0.73 -1.2
515,859 - CA264_02235 0.73 +0.8
515,859 - CA264_02235 0.73 +0.7
515,969 - CA264_02235 0.86 -0.5
516,050 - -0.1
516,061 + -0.5
516,062 - +0.6
516,089 + -1.0
516,095 + -0.1
516,095 + +1.3
516,095 + -0.1
516,096 - +0.3
516,096 - -0.2
516,097 + -0.5
516,098 - -1.2
516,217 + +0.1
516,217 + +1.4
516,218 - +0.7
516,226 + -0.5
516,227 - +1.2
516,285 + +0.8
516,338 + CA264_02240 0.11 -0.8
516,338 + CA264_02240 0.11 +0.5
516,339 - CA264_02240 0.11 +1.5
516,584 - CA264_02240 0.22 -0.4
516,584 - CA264_02240 0.22 +0.0
516,612 + CA264_02240 0.23 -0.5
516,625 + CA264_02240 0.23 -1.7
516,626 - CA264_02240 0.23 +1.0
516,640 + CA264_02240 0.24 -0.3
516,641 - CA264_02240 0.24 -0.1
516,739 + CA264_02240 0.28 -0.4
516,739 + CA264_02240 0.28 +0.0
516,743 - CA264_02240 0.28 -0.4
516,763 + CA264_02240 0.29 -0.6
516,791 - CA264_02240 0.30 +1.0
516,825 + CA264_02240 0.32 -0.2
516,826 - CA264_02240 0.32 -0.5
516,913 + CA264_02240 0.36 -0.1
516,913 + CA264_02240 0.36 -0.8
516,923 + CA264_02240 0.36 -0.1
516,948 - CA264_02240 0.37 +1.0
516,950 - CA264_02240 0.37 -0.3
517,029 - CA264_02240 0.41 +0.5
517,047 + CA264_02240 0.41 -0.3
517,055 - CA264_02240 0.42 -0.5
517,055 - CA264_02240 0.42 +0.3
517,069 + CA264_02240 0.42 +0.1
517,069 + CA264_02240 0.42 -0.3
517,070 - CA264_02240 0.42 -0.5
517,070 - CA264_02240 0.42 -0.1
517,070 - CA264_02240 0.42 +0.1
517,070 - CA264_02240 0.42 -0.1
517,162 + CA264_02240 0.46 +0.1
517,163 - CA264_02240 0.46 -1.7
517,221 + CA264_02240 0.49 -0.2
517,221 + CA264_02240 0.49 -1.5
517,238 + CA264_02240 0.50 -0.9
517,239 - CA264_02240 0.50 -0.4
517,298 + CA264_02240 0.52 -1.0
517,298 + CA264_02240 0.52 +0.0
517,299 - CA264_02240 0.52 -0.5
517,299 - CA264_02240 0.52 +1.0
517,300 + CA264_02240 0.52 -0.2
517,444 + CA264_02240 0.58 +0.4
517,445 - CA264_02240 0.59 +0.0
517,445 - CA264_02240 0.59 +0.7
517,517 - CA264_02240 0.62 -0.1
517,578 - CA264_02240 0.64 -1.0
517,637 + CA264_02240 0.67 -0.7
517,638 - CA264_02240 0.67 -1.5
517,648 - CA264_02240 0.67 -0.2
517,653 - CA264_02240 0.67 -0.3
517,669 - CA264_02240 0.68 +0.6
517,703 + CA264_02240 0.70 -1.0
517,722 + CA264_02240 0.70 -0.9
518,025 + CA264_02240 0.83 -1.3
518,047 - CA264_02240 0.84 +0.9
518,170 + CA264_02240 0.90 +0.7
518,179 + -0.2
518,180 - -0.2
518,332 - +0.0
518,447 - -0.6
518,447 - +0.1
518,493 + -2.3
518,510 + +1.8
518,511 - +0.7
518,541 - -0.5
518,587 - -0.2
518,589 + -0.3
518,590 - -2.0
518,623 + -0.7
518,632 + -0.5
518,632 + -0.6
518,660 - +3.0
518,816 + CA264_02245 0.14 +0.6
518,893 + CA264_02245 0.20 +0.6
518,893 + CA264_02245 0.20 -1.5
518,893 + CA264_02245 0.20 +0.0
518,992 - CA264_02245 0.27 -0.4
519,080 - CA264_02245 0.34 +0.3
519,280 + CA264_02245 0.49 -0.7
519,338 - CA264_02245 0.53 -0.1
519,338 - CA264_02245 0.53 +0.9
519,356 + CA264_02245 0.54 +0.3
519,356 + CA264_02245 0.54 +0.7

Or see this region's nucleotide sequence