Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02085

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02075 and CA264_02080 are separated by 68 nucleotidesCA264_02080 and CA264_02085 are separated by 82 nucleotidesCA264_02085 and CA264_02090 are separated by 36 nucleotides CA264_02075: CA264_02075 - hypothetical protein, at 479,332 to 480,345 _02075 CA264_02080: CA264_02080 - hypothetical protein, at 480,414 to 480,782 _02080 CA264_02085: CA264_02085 - hypothetical protein, at 480,865 to 481,812 _02085 CA264_02090: CA264_02090 - peptidase M28, at 481,849 to 483,147 _02090 Position (kb) 480 481 482Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 479.954 kb on - strand, within CA264_02075at 479.958 kb on + strand, within CA264_02075at 479.958 kb on + strand, within CA264_02075at 479.960 kb on + strand, within CA264_02075at 479.974 kb on - strand, within CA264_02075at 480.096 kb on - strand, within CA264_02075at 480.096 kb on - strand, within CA264_02075at 480.119 kb on + strand, within CA264_02075at 480.120 kb on - strand, within CA264_02075at 480.137 kb on + strand, within CA264_02075at 480.138 kb on - strand, within CA264_02075at 480.138 kb on - strand, within CA264_02075at 480.195 kb on - strand, within CA264_02075at 480.242 kb on + strand, within CA264_02075at 480.242 kb on + strand, within CA264_02075at 480.243 kb on - strand, within CA264_02075at 480.243 kb on - strand, within CA264_02075at 480.243 kb on - strand, within CA264_02075at 480.275 kb on + strandat 480.278 kb on + strandat 480.334 kb on + strandat 480.415 kb on + strandat 480.416 kb on - strandat 480.444 kb on - strandat 480.444 kb on - strandat 480.493 kb on - strand, within CA264_02080at 480.785 kb on + strandat 480.785 kb on + strandat 480.786 kb on - strandat 480.786 kb on - strandat 480.787 kb on + strandat 480.787 kb on + strandat 480.787 kb on + strandat 480.787 kb on + strandat 480.787 kb on + strandat 480.788 kb on - strandat 480.819 kb on + strandat 480.819 kb on + strandat 480.819 kb on + strandat 480.820 kb on - strandat 480.820 kb on - strandat 480.840 kb on + strandat 480.841 kb on - strandat 480.874 kb on - strandat 480.878 kb on + strandat 480.892 kb on + strandat 480.893 kb on - strandat 480.912 kb on + strandat 480.913 kb on - strandat 480.923 kb on + strandat 480.923 kb on + strandat 480.929 kb on - strandat 480.929 kb on - strandat 480.961 kb on + strand, within CA264_02085at 480.961 kb on + strand, within CA264_02085at 480.964 kb on - strand, within CA264_02085at 480.984 kb on + strand, within CA264_02085at 480.990 kb on + strand, within CA264_02085at 481.003 kb on + strand, within CA264_02085at 481.003 kb on + strand, within CA264_02085at 481.003 kb on + strand, within CA264_02085at 481.114 kb on - strand, within CA264_02085at 481.134 kb on + strand, within CA264_02085at 481.171 kb on + strand, within CA264_02085at 481.212 kb on + strand, within CA264_02085at 481.218 kb on - strand, within CA264_02085at 481.221 kb on + strand, within CA264_02085at 481.222 kb on - strand, within CA264_02085at 481.233 kb on + strand, within CA264_02085at 481.236 kb on + strand, within CA264_02085at 481.238 kb on + strand, within CA264_02085at 481.238 kb on + strand, within CA264_02085at 481.387 kb on - strand, within CA264_02085at 481.424 kb on - strand, within CA264_02085at 481.475 kb on - strand, within CA264_02085at 481.489 kb on + strand, within CA264_02085at 481.490 kb on - strand, within CA264_02085at 481.599 kb on - strand, within CA264_02085at 481.675 kb on + strand, within CA264_02085at 481.675 kb on + strand, within CA264_02085at 481.675 kb on + strand, within CA264_02085at 481.676 kb on - strand, within CA264_02085at 481.679 kb on - strand, within CA264_02085at 481.679 kb on - strand, within CA264_02085at 481.684 kb on + strand, within CA264_02085at 481.685 kb on - strand, within CA264_02085at 481.762 kb on + strandat 481.762 kb on + strandat 481.763 kb on - strandat 481.763 kb on - strandat 481.767 kb on + strandat 481.768 kb on - strandat 481.771 kb on + strandat 481.816 kb on - strandat 481.838 kb on - strandat 481.866 kb on + strandat 481.867 kb on - strandat 481.867 kb on - strandat 481.867 kb on - strandat 481.871 kb on - strandat 482.006 kb on - strand, within CA264_02090at 482.114 kb on + strand, within CA264_02090at 482.115 kb on - strand, within CA264_02090at 482.115 kb on - strand, within CA264_02090at 482.180 kb on + strand, within CA264_02090at 482.257 kb on + strand, within CA264_02090at 482.258 kb on - strand, within CA264_02090at 482.273 kb on + strand, within CA264_02090at 482.273 kb on + strand, within CA264_02090at 482.274 kb on - strand, within CA264_02090at 482.355 kb on - strand, within CA264_02090at 482.355 kb on - strand, within CA264_02090at 482.375 kb on - strand, within CA264_02090at 482.375 kb on - strand, within CA264_02090at 482.459 kb on + strand, within CA264_02090at 482.524 kb on + strand, within CA264_02090at 482.539 kb on + strand, within CA264_02090at 482.540 kb on - strand, within CA264_02090at 482.540 kb on - strand, within CA264_02090at 482.540 kb on - strand, within CA264_02090at 482.562 kb on + strand, within CA264_02090at 482.563 kb on - strand, within CA264_02090at 482.564 kb on + strand, within CA264_02090at 482.565 kb on - strand, within CA264_02090at 482.565 kb on - strand, within CA264_02090at 482.565 kb on - strand, within CA264_02090at 482.595 kb on + strand, within CA264_02090at 482.600 kb on - strand, within CA264_02090at 482.600 kb on - strand, within CA264_02090at 482.655 kb on - strand, within CA264_02090at 482.707 kb on + strand, within CA264_02090at 482.707 kb on + strand, within CA264_02090at 482.708 kb on - strand, within CA264_02090at 482.708 kb on - strand, within CA264_02090at 482.708 kb on - strand, within CA264_02090

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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479,954 - CA264_02075 0.61 +1.2
479,958 + CA264_02075 0.62 -2.0
479,958 + CA264_02075 0.62 +0.6
479,960 + CA264_02075 0.62 -0.0
479,974 - CA264_02075 0.63 +0.0
480,096 - CA264_02075 0.75 -0.2
480,096 - CA264_02075 0.75 -0.3
480,119 + CA264_02075 0.78 +0.5
480,120 - CA264_02075 0.78 +1.4
480,137 + CA264_02075 0.79 +1.0
480,138 - CA264_02075 0.79 -0.1
480,138 - CA264_02075 0.79 -0.1
480,195 - CA264_02075 0.85 +1.6
480,242 + CA264_02075 0.90 -0.1
480,242 + CA264_02075 0.90 -1.3
480,243 - CA264_02075 0.90 +1.6
480,243 - CA264_02075 0.90 -0.1
480,243 - CA264_02075 0.90 +0.3
480,275 + -0.1
480,278 + +0.2
480,334 + -0.1
480,415 + +0.1
480,416 - -1.4
480,444 - +0.5
480,444 - -0.6
480,493 - CA264_02080 0.21 -0.5
480,785 + -1.1
480,785 + +0.6
480,786 - +1.0
480,786 - +0.5
480,787 + -1.0
480,787 + +1.6
480,787 + -0.8
480,787 + +0.3
480,787 + +0.1
480,788 - +0.0
480,819 + +0.4
480,819 + -2.1
480,819 + +0.1
480,820 - -0.1
480,820 - -1.5
480,840 + -0.5
480,841 - +0.0
480,874 - -0.2
480,878 + -0.1
480,892 + -0.9
480,893 - -0.2
480,912 + -0.7
480,913 - -0.2
480,923 + +1.0
480,923 + +0.3
480,929 - +0.2
480,929 - +0.0
480,961 + CA264_02085 0.10 -0.1
480,961 + CA264_02085 0.10 -1.3
480,964 - CA264_02085 0.10 +2.0
480,984 + CA264_02085 0.13 +0.3
480,990 + CA264_02085 0.13 -1.2
481,003 + CA264_02085 0.15 -0.5
481,003 + CA264_02085 0.15 -3.1
481,003 + CA264_02085 0.15 -1.0
481,114 - CA264_02085 0.26 -0.4
481,134 + CA264_02085 0.28 -1.0
481,171 + CA264_02085 0.32 -0.2
481,212 + CA264_02085 0.37 -0.5
481,218 - CA264_02085 0.37 -1.3
481,221 + CA264_02085 0.38 -1.5
481,222 - CA264_02085 0.38 +0.2
481,233 + CA264_02085 0.39 -0.4
481,236 + CA264_02085 0.39 -0.5
481,238 + CA264_02085 0.39 -0.2
481,238 + CA264_02085 0.39 +1.6
481,387 - CA264_02085 0.55 -1.5
481,424 - CA264_02085 0.59 +1.0
481,475 - CA264_02085 0.64 +0.0
481,489 + CA264_02085 0.66 +0.5
481,490 - CA264_02085 0.66 -0.1
481,599 - CA264_02085 0.77 -0.1
481,675 + CA264_02085 0.85 -2.1
481,675 + CA264_02085 0.85 +1.0
481,675 + CA264_02085 0.85 +0.6
481,676 - CA264_02085 0.86 +0.8
481,679 - CA264_02085 0.86 +0.5
481,679 - CA264_02085 0.86 +1.0
481,684 + CA264_02085 0.86 -0.0
481,685 - CA264_02085 0.86 -0.0
481,762 + -1.1
481,762 + +0.5
481,763 - +0.5
481,763 - +1.8
481,767 + -0.1
481,768 - -0.4
481,771 + -1.0
481,816 - +0.7
481,838 - +0.6
481,866 + -0.9
481,867 - -0.1
481,867 - -1.3
481,867 - +0.3
481,871 - +0.7
482,006 - CA264_02090 0.12 +0.1
482,114 + CA264_02090 0.20 +1.4
482,115 - CA264_02090 0.20 -0.1
482,115 - CA264_02090 0.20 +0.2
482,180 + CA264_02090 0.25 +0.4
482,257 + CA264_02090 0.31 +1.0
482,258 - CA264_02090 0.31 -0.5
482,273 + CA264_02090 0.33 -0.2
482,273 + CA264_02090 0.33 +0.8
482,274 - CA264_02090 0.33 -2.3
482,355 - CA264_02090 0.39 +0.0
482,355 - CA264_02090 0.39 -3.1
482,375 - CA264_02090 0.40 +0.2
482,375 - CA264_02090 0.40 +0.0
482,459 + CA264_02090 0.47 -0.7
482,524 + CA264_02090 0.52 -1.9
482,539 + CA264_02090 0.53 -0.7
482,540 - CA264_02090 0.53 +0.2
482,540 - CA264_02090 0.53 +0.7
482,540 - CA264_02090 0.53 -0.4
482,562 + CA264_02090 0.55 -1.0
482,563 - CA264_02090 0.55 -0.0
482,564 + CA264_02090 0.55 +0.5
482,565 - CA264_02090 0.55 +0.5
482,565 - CA264_02090 0.55 -0.3
482,565 - CA264_02090 0.55 -0.1
482,595 + CA264_02090 0.57 -0.2
482,600 - CA264_02090 0.58 -1.0
482,600 - CA264_02090 0.58 +1.0
482,655 - CA264_02090 0.62 +1.5
482,707 + CA264_02090 0.66 +0.1
482,707 + CA264_02090 0.66 +0.7
482,708 - CA264_02090 0.66 -0.3
482,708 - CA264_02090 0.66 +3.4
482,708 - CA264_02090 0.66 +0.2

Or see this region's nucleotide sequence