Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28150 and ABID97_RS28155 are separated by 117 nucleotides ABID97_RS28155 and ABID97_RS28160 are separated by 97 nucleotides
ABID97_RS28150: ABID97_RS28150 - 3-deoxy-7-phosphoheptulonate synthase, at 548,552 to 549,679
_RS28150
ABID97_RS28155: ABID97_RS28155 - YihY/virulence factor BrkB family protein, at 549,797 to 550,933
_RS28155
ABID97_RS28160: ABID97_RS28160 - sensor domain-containing diguanylate cyclase, at 551,031 to 552,563
_RS28160
Position (kb) 549
550
551 Strain fitness (log2 ratio) -1
0
1 at 549.300 kb on + strand, within ABID97_RS28150 at 549.301 kb on - strand, within ABID97_RS28150 at 549.340 kb on - strand, within ABID97_RS28150 at 550.111 kb on - strand, within ABID97_RS28155 at 550.155 kb on + strand, within ABID97_RS28155 at 550.231 kb on - strand, within ABID97_RS28155 at 550.333 kb on - strand, within ABID97_RS28155 at 550.836 kb on + strand at 550.837 kb on - strand at 551.033 kb on - strand at 551.033 kb on - strand at 551.092 kb on + strand at 551.405 kb on - strand, within ABID97_RS28160 at 551.416 kb on + strand, within ABID97_RS28160 at 551.863 kb on + strand, within ABID97_RS28160 at 551.863 kb on + strand, within ABID97_RS28160
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 549,300 + ABID97_RS28150 0.66 +1.6 549,301 - ABID97_RS28150 0.66 -0.3 549,340 - ABID97_RS28150 0.70 -0.5 550,111 - ABID97_RS28155 0.28 -0.2 550,155 + ABID97_RS28155 0.31 +0.0 550,231 - ABID97_RS28155 0.38 -1.0 550,333 - ABID97_RS28155 0.47 -0.4 550,836 + -0.5 550,837 - -1.2 551,033 - +0.2 551,033 - +0.1 551,092 + -0.3 551,405 - ABID97_RS28160 0.24 -0.2 551,416 + ABID97_RS28160 0.25 -0.6 551,863 + ABID97_RS28160 0.54 +0.5 551,863 + ABID97_RS28160 0.54 -0.1
Or see this region's nucleotide sequence