Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24300 and ABID97_RS24305 are separated by 41 nucleotides ABID97_RS24305 and ABID97_RS24310 overlap by 4 nucleotides ABID97_RS24310 and ABID97_RS24315 are separated by 34 nucleotides ABID97_RS24315 and ABID97_RS24320 overlap by 4 nucleotides
ABID97_RS24300: ABID97_RS24300 - type II secretion system F family protein, at 5,025,218 to 5,026,183
_RS24300
ABID97_RS24305: ABID97_RS24305 - hypothetical protein, at 5,026,225 to 5,027,112
_RS24305
ABID97_RS24310: ABID97_RS24310 - DUF3613 domain-containing protein, at 5,027,109 to 5,027,483
_RS24310
ABID97_RS24315: ABID97_RS24315 - TadE/TadG family type IV pilus assembly protein, at 5,027,518 to 5,028,003
_RS24315
ABID97_RS24320: ABID97_RS24320 - TadE/TadG family type IV pilus assembly protein, at 5,028,000 to 5,028,494
_RS24320
Position (kb) 5027
5028 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5026.295 kb on - strand at 5026.295 kb on - strand at 5026.385 kb on - strand, within ABID97_RS24305 at 5026.385 kb on - strand, within ABID97_RS24305 at 5026.385 kb on - strand, within ABID97_RS24305 at 5026.385 kb on - strand, within ABID97_RS24305 at 5026.807 kb on + strand, within ABID97_RS24305 at 5026.807 kb on + strand, within ABID97_RS24305 at 5026.808 kb on - strand, within ABID97_RS24305 at 5027.391 kb on + strand, within ABID97_RS24310 at 5027.392 kb on - strand, within ABID97_RS24310 at 5027.392 kb on - strand, within ABID97_RS24310 at 5027.400 kb on + strand, within ABID97_RS24310 at 5027.400 kb on + strand, within ABID97_RS24310 at 5027.400 kb on + strand, within ABID97_RS24310 at 5027.566 kb on + strand at 5027.566 kb on + strand at 5027.567 kb on - strand, within ABID97_RS24315 at 5027.614 kb on + strand, within ABID97_RS24315 at 5027.614 kb on + strand, within ABID97_RS24315 at 5027.615 kb on - strand, within ABID97_RS24315 at 5027.615 kb on - strand, within ABID97_RS24315 at 5027.751 kb on - strand, within ABID97_RS24315 at 5028.105 kb on + strand, within ABID97_RS24320 at 5028.106 kb on - strand, within ABID97_RS24320 at 5028.106 kb on - strand, within ABID97_RS24320 at 5028.106 kb on - strand, within ABID97_RS24320 at 5028.135 kb on + strand, within ABID97_RS24320 at 5028.135 kb on + strand, within ABID97_RS24320 at 5028.135 kb on + strand, within ABID97_RS24320 at 5028.136 kb on - strand, within ABID97_RS24320 at 5028.136 kb on - strand, within ABID97_RS24320 at 5028.246 kb on + strand, within ABID97_RS24320 at 5028.246 kb on + strand, within ABID97_RS24320 at 5028.247 kb on - strand, within ABID97_RS24320
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 5,026,295 - -0.0 5,026,295 - +0.6 5,026,385 - ABID97_RS24305 0.18 +0.1 5,026,385 - ABID97_RS24305 0.18 +1.3 5,026,385 - ABID97_RS24305 0.18 -0.2 5,026,385 - ABID97_RS24305 0.18 +0.7 5,026,807 + ABID97_RS24305 0.66 +0.4 5,026,807 + ABID97_RS24305 0.66 +1.3 5,026,808 - ABID97_RS24305 0.66 +0.1 5,027,391 + ABID97_RS24310 0.75 +0.5 5,027,392 - ABID97_RS24310 0.75 +1.3 5,027,392 - ABID97_RS24310 0.75 -0.1 5,027,400 + ABID97_RS24310 0.78 +1.1 5,027,400 + ABID97_RS24310 0.78 +0.1 5,027,400 + ABID97_RS24310 0.78 +0.2 5,027,566 + +1.4 5,027,566 + +0.8 5,027,567 - ABID97_RS24315 0.10 +0.4 5,027,614 + ABID97_RS24315 0.20 +0.5 5,027,614 + ABID97_RS24315 0.20 -0.2 5,027,615 - ABID97_RS24315 0.20 +0.8 5,027,615 - ABID97_RS24315 0.20 +0.2 5,027,751 - ABID97_RS24315 0.48 -0.0 5,028,105 + ABID97_RS24320 0.21 -0.0 5,028,106 - ABID97_RS24320 0.21 +0.4 5,028,106 - ABID97_RS24320 0.21 -0.0 5,028,106 - ABID97_RS24320 0.21 +0.3 5,028,135 + ABID97_RS24320 0.27 -0.1 5,028,135 + ABID97_RS24320 0.27 -0.5 5,028,135 + ABID97_RS24320 0.27 -2.0 5,028,136 - ABID97_RS24320 0.27 -0.1 5,028,136 - ABID97_RS24320 0.27 -0.6 5,028,246 + ABID97_RS24320 0.50 +0.6 5,028,246 + ABID97_RS24320 0.50 +1.0 5,028,247 - ABID97_RS24320 0.50 +2.3
Or see this region's nucleotide sequence