Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20805 and ABID97_RS20810 are separated by 31 nucleotides ABID97_RS20810 and ABID97_RS20815 are separated by 165 nucleotides ABID97_RS20815 and ABID97_RS20820 are separated by 28 nucleotides ABID97_RS20820 and ABID97_RS20825 are separated by 18 nucleotides
ABID97_RS20805: ABID97_RS20805 - magnesium/cobalt transporter CorA, at 4,298,255 to 4,299,232
_RS20805
ABID97_RS20810: ABID97_RS20810 - hypothetical protein, at 4,299,264 to 4,299,887
_RS20810
ABID97_RS20815: ABID97_RS20815 - DNA mismatch repair protein MutS, at 4,300,053 to 4,302,650
_RS20815
ABID97_RS20820: ABID97_RS20820 - proteasome-type protease, at 4,302,679 to 4,303,518
_RS20820
ABID97_RS20825: ABID97_RS20825 - alpha/beta hydrolase, at 4,303,537 to 4,304,343
_RS20825
Position (kb) 4300
4301
4302
4303 Strain fitness (log2 ratio) -1
0
1
2
3 at 4299.159 kb on + strand at 4299.211 kb on - strand at 4299.659 kb on + strand, within ABID97_RS20810 at 4299.802 kb on + strand, within ABID97_RS20810 at 4299.803 kb on - strand, within ABID97_RS20810 at 4300.066 kb on - strand at 4300.125 kb on + strand at 4300.125 kb on + strand at 4300.555 kb on - strand, within ABID97_RS20815 at 4301.478 kb on + strand, within ABID97_RS20815 at 4301.479 kb on - strand, within ABID97_RS20815 at 4301.524 kb on - strand, within ABID97_RS20815 at 4301.641 kb on - strand, within ABID97_RS20815 at 4301.937 kb on + strand, within ABID97_RS20815 at 4301.937 kb on + strand, within ABID97_RS20815 at 4301.937 kb on + strand, within ABID97_RS20815 at 4302.255 kb on + strand, within ABID97_RS20815 at 4302.255 kb on + strand, within ABID97_RS20815 at 4302.381 kb on + strand, within ABID97_RS20815 at 4302.541 kb on + strand at 4302.606 kb on + strand at 4302.607 kb on - strand at 4302.685 kb on + strand at 4302.686 kb on - strand at 4302.686 kb on - strand at 4302.788 kb on - strand, within ABID97_RS20820 at 4302.989 kb on - strand, within ABID97_RS20820 at 4303.093 kb on + strand, within ABID97_RS20820 at 4303.294 kb on + strand, within ABID97_RS20820 at 4303.294 kb on + strand, within ABID97_RS20820 at 4303.351 kb on + strand, within ABID97_RS20820 at 4303.354 kb on + strand, within ABID97_RS20820 at 4303.354 kb on + strand, within ABID97_RS20820 at 4303.516 kb on + strand at 4303.516 kb on + strand at 4303.517 kb on - strand at 4303.517 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 4,299,159 + +0.2 4,299,211 - +2.5 4,299,659 + ABID97_RS20810 0.63 -0.0 4,299,802 + ABID97_RS20810 0.86 -0.1 4,299,803 - ABID97_RS20810 0.86 -1.5 4,300,066 - +1.2 4,300,125 + -0.4 4,300,125 + -0.6 4,300,555 - ABID97_RS20815 0.19 -1.3 4,301,478 + ABID97_RS20815 0.55 +0.6 4,301,479 - ABID97_RS20815 0.55 +0.5 4,301,524 - ABID97_RS20815 0.57 -0.6 4,301,641 - ABID97_RS20815 0.61 +0.5 4,301,937 + ABID97_RS20815 0.73 -0.1 4,301,937 + ABID97_RS20815 0.73 +3.2 4,301,937 + ABID97_RS20815 0.73 -0.1 4,302,255 + ABID97_RS20815 0.85 +0.1 4,302,255 + ABID97_RS20815 0.85 +0.5 4,302,381 + ABID97_RS20815 0.90 -0.2 4,302,541 + +0.8 4,302,606 + -0.1 4,302,607 - +0.2 4,302,685 + -0.6 4,302,686 - -0.8 4,302,686 - -0.1 4,302,788 - ABID97_RS20820 0.13 +0.2 4,302,989 - ABID97_RS20820 0.37 -0.4 4,303,093 + ABID97_RS20820 0.49 +0.3 4,303,294 + ABID97_RS20820 0.73 +1.0 4,303,294 + ABID97_RS20820 0.73 +0.2 4,303,351 + ABID97_RS20820 0.80 +0.2 4,303,354 + ABID97_RS20820 0.80 -1.0 4,303,354 + ABID97_RS20820 0.80 +0.4 4,303,516 + -0.8 4,303,516 + -0.1 4,303,517 - +0.2 4,303,517 - +0.3
Or see this region's nucleotide sequence