Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19705

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS19700 and ABID97_RS19705 overlap by 4 nucleotidesABID97_RS19705 and ABID97_RS19710 overlap by 4 nucleotides ABID97_RS19700: ABID97_RS19700 - MFS transporter, at 4,070,186 to 4,071,406 _RS19700 ABID97_RS19705: ABID97_RS19705 - carboxymuconolactone decarboxylase family protein, at 4,071,403 to 4,071,834 _RS19705 ABID97_RS19710: ABID97_RS19710 - 3-carboxy-cis,cis-muconate cycloisomerase, at 4,071,831 to 4,073,042 _RS19710 Position (kb) 4071 4072Strain fitness (log2 ratio) -2 -1 0 1at 4070.415 kb on - strand, within ABID97_RS19700at 4070.572 kb on + strand, within ABID97_RS19700at 4070.661 kb on + strand, within ABID97_RS19700at 4070.662 kb on - strand, within ABID97_RS19700at 4070.662 kb on - strand, within ABID97_RS19700at 4070.692 kb on + strand, within ABID97_RS19700at 4070.694 kb on + strand, within ABID97_RS19700at 4070.695 kb on - strand, within ABID97_RS19700at 4070.695 kb on - strand, within ABID97_RS19700at 4070.887 kb on - strand, within ABID97_RS19700at 4071.491 kb on + strand, within ABID97_RS19705at 4071.491 kb on + strand, within ABID97_RS19705at 4071.492 kb on - strand, within ABID97_RS19705at 4071.630 kb on - strand, within ABID97_RS19705at 4071.795 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
4,070,415 - ABID97_RS19700 0.19 -1.8
4,070,572 + ABID97_RS19700 0.32 +0.4
4,070,661 + ABID97_RS19700 0.39 -0.7
4,070,662 - ABID97_RS19700 0.39 -0.2
4,070,662 - ABID97_RS19700 0.39 +1.7
4,070,692 + ABID97_RS19700 0.41 +0.2
4,070,694 + ABID97_RS19700 0.42 -0.9
4,070,695 - ABID97_RS19700 0.42 -0.5
4,070,695 - ABID97_RS19700 0.42 -2.1
4,070,887 - ABID97_RS19700 0.57 +0.2
4,071,491 + ABID97_RS19705 0.20 -0.4
4,071,491 + ABID97_RS19705 0.20 +0.1
4,071,492 - ABID97_RS19705 0.21 -1.3
4,071,630 - ABID97_RS19705 0.53 -0.7
4,071,795 - -0.3

Or see this region's nucleotide sequence