Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15025

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15020 and ABID97_RS15025 are separated by 521 nucleotidesABID97_RS15025 and ABID97_RS15030 are separated by 613 nucleotides ABID97_RS15020: ABID97_RS15020 - aldehyde dehydrogenase, at 3,119,858 to 3,121,378 _RS15020 ABID97_RS15025: ABID97_RS15025 - hypothetical protein, at 3,121,900 to 3,122,193 _RS15025 ABID97_RS15030: ABID97_RS15030 - hypothetical protein, at 3,122,807 to 3,123,352 _RS15030 Position (kb) 3121 3122 3123Strain fitness (log2 ratio) -2 -1 0 1at 3120.934 kb on - strand, within ABID97_RS15020at 3120.934 kb on - strand, within ABID97_RS15020at 3120.939 kb on + strand, within ABID97_RS15020at 3120.940 kb on - strand, within ABID97_RS15020at 3120.940 kb on - strand, within ABID97_RS15020at 3121.314 kb on + strandat 3121.315 kb on - strandat 3121.315 kb on - strandat 3122.010 kb on + strand, within ABID97_RS15025at 3122.095 kb on + strand, within ABID97_RS15025at 3122.095 kb on + strand, within ABID97_RS15025at 3122.095 kb on + strand, within ABID97_RS15025at 3122.729 kb on - strandat 3122.759 kb on + strandat 3122.759 kb on + strandat 3122.788 kb on + strandat 3122.796 kb on - strandat 3122.809 kb on - strandat 3122.913 kb on + strand, within ABID97_RS15030at 3122.927 kb on + strand, within ABID97_RS15030at 3122.927 kb on + strand, within ABID97_RS15030at 3122.930 kb on + strand, within ABID97_RS15030at 3123.149 kb on + strand, within ABID97_RS15030

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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3,120,934 - ABID97_RS15020 0.71 +0.1
3,120,934 - ABID97_RS15020 0.71 -2.4
3,120,939 + ABID97_RS15020 0.71 -0.7
3,120,940 - ABID97_RS15020 0.71 -0.6
3,120,940 - ABID97_RS15020 0.71 +0.2
3,121,314 + +0.4
3,121,315 - -0.8
3,121,315 - +0.8
3,122,010 + ABID97_RS15025 0.37 +1.0
3,122,095 + ABID97_RS15025 0.66 +0.4
3,122,095 + ABID97_RS15025 0.66 -0.1
3,122,095 + ABID97_RS15025 0.66 -0.1
3,122,729 - +0.0
3,122,759 + -1.5
3,122,759 + +0.9
3,122,788 + -0.3
3,122,796 - -0.0
3,122,809 - +0.1
3,122,913 + ABID97_RS15030 0.19 -0.3
3,122,927 + ABID97_RS15030 0.22 +0.2
3,122,927 + ABID97_RS15030 0.22 -0.2
3,122,930 + ABID97_RS15030 0.23 +0.1
3,123,149 + ABID97_RS15030 0.63 +0.2

Or see this region's nucleotide sequence