Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11905

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11900 and ABID97_RS11905 overlap by 4 nucleotidesABID97_RS11905 and ABID97_RS11910 overlap by 4 nucleotides ABID97_RS11900: ABID97_RS11900 - glycosyltransferase, at 2,458,083 to 2,459,204 _RS11900 ABID97_RS11905: ABID97_RS11905 - glycosyltransferase, at 2,459,201 to 2,460,310 _RS11905 ABID97_RS11910: ABID97_RS11910 - glycosyltransferase, at 2,460,307 to 2,461,401 _RS11910 Position (kb) 2459 2460 2461Strain fitness (log2 ratio) -1 0 1at 2458.279 kb on - strand, within ABID97_RS11900at 2458.546 kb on - strand, within ABID97_RS11900at 2458.882 kb on - strand, within ABID97_RS11900at 2458.882 kb on - strand, within ABID97_RS11900at 2459.274 kb on - strandat 2459.765 kb on + strand, within ABID97_RS11905at 2460.096 kb on - strand, within ABID97_RS11905at 2460.234 kb on - strandat 2460.234 kb on - strandat 2460.458 kb on - strand, within ABID97_RS11910at 2460.649 kb on + strand, within ABID97_RS11910at 2460.649 kb on + strand, within ABID97_RS11910at 2460.650 kb on - strand, within ABID97_RS11910at 2460.743 kb on - strand, within ABID97_RS11910at 2460.817 kb on + strand, within ABID97_RS11910

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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2,458,279 - ABID97_RS11900 0.17 -0.3
2,458,546 - ABID97_RS11900 0.41 +0.8
2,458,882 - ABID97_RS11900 0.71 +0.8
2,458,882 - ABID97_RS11900 0.71 -0.5
2,459,274 - -1.3
2,459,765 + ABID97_RS11905 0.51 +0.3
2,460,096 - ABID97_RS11905 0.81 +0.5
2,460,234 - +0.1
2,460,234 - +0.6
2,460,458 - ABID97_RS11910 0.14 +0.3
2,460,649 + ABID97_RS11910 0.31 +0.6
2,460,649 + ABID97_RS11910 0.31 -0.3
2,460,650 - ABID97_RS11910 0.31 -0.5
2,460,743 - ABID97_RS11910 0.40 -0.4
2,460,817 + ABID97_RS11910 0.47 -0.1

Or see this region's nucleotide sequence