Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11220

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11215 and ABID97_RS11220 are separated by 46 nucleotidesABID97_RS11220 and ABID97_RS11225 are separated by 96 nucleotides ABID97_RS11215: ABID97_RS11215 - ABC transporter substrate-binding protein, at 2,318,781 to 2,320,043 _RS11215 ABID97_RS11220: ABID97_RS11220 - shikimate dehydrogenase, at 2,320,090 to 2,320,923 _RS11220 ABID97_RS11225: ABID97_RS11225 - glycerol dehydrogenase, at 2,321,020 to 2,322,153 _RS11225 Position (kb) 2320 2321Strain fitness (log2 ratio) -1 0 1at 2319.211 kb on + strand, within ABID97_RS11215at 2319.265 kb on + strand, within ABID97_RS11215at 2319.266 kb on - strand, within ABID97_RS11215at 2319.266 kb on - strand, within ABID97_RS11215at 2319.317 kb on - strand, within ABID97_RS11215at 2319.569 kb on - strand, within ABID97_RS11215at 2319.569 kb on - strand, within ABID97_RS11215at 2321.005 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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2,319,211 + ABID97_RS11215 0.34 -0.2
2,319,265 + ABID97_RS11215 0.38 -0.2
2,319,266 - ABID97_RS11215 0.38 -0.3
2,319,266 - ABID97_RS11215 0.38 -1.2
2,319,317 - ABID97_RS11215 0.42 +1.3
2,319,569 - ABID97_RS11215 0.62 -0.7
2,319,569 - ABID97_RS11215 0.62 +0.7
2,321,005 + -0.2

Or see this region's nucleotide sequence