Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11205

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11195 and ABID97_RS11200 overlap by 20 nucleotidesABID97_RS11200 and ABID97_RS11205 overlap by 4 nucleotidesABID97_RS11205 and ABID97_RS11210 are separated by 9 nucleotides ABID97_RS11195: ABID97_RS11195 - ABC transporter ATP-binding protein, at 2,315,297 to 2,316,013 _RS11195 ABID97_RS11200: ABID97_RS11200 - ABC transporter ATP-binding protein, at 2,315,994 to 2,316,740 _RS11200 ABID97_RS11205: ABID97_RS11205 - branched-chain amino acid ABC transporter permease, at 2,316,737 to 2,317,771 _RS11205 ABID97_RS11210: ABID97_RS11210 - branched-chain amino acid ABC transporter permease, at 2,317,781 to 2,318,668 _RS11210 Position (kb) 2316 2317 2318Strain fitness (log2 ratio) -1 0 1at 2315.870 kb on + strand, within ABID97_RS11195at 2315.871 kb on - strand, within ABID97_RS11195at 2316.014 kb on - strandat 2316.014 kb on - strandat 2316.028 kb on + strandat 2316.028 kb on + strandat 2316.028 kb on + strandat 2316.029 kb on - strandat 2316.846 kb on + strand, within ABID97_RS11205at 2317.057 kb on - strand, within ABID97_RS11205at 2317.267 kb on - strand, within ABID97_RS11205at 2317.270 kb on - strand, within ABID97_RS11205at 2317.273 kb on - strand, within ABID97_RS11205at 2317.540 kb on - strand, within ABID97_RS11205at 2317.641 kb on + strand, within ABID97_RS11205at 2317.641 kb on + strand, within ABID97_RS11205at 2318.337 kb on + strand, within ABID97_RS11210at 2318.338 kb on - strand, within ABID97_RS11210at 2318.434 kb on - strand, within ABID97_RS11210at 2318.478 kb on + strand, within ABID97_RS11210at 2318.478 kb on + strand, within ABID97_RS11210at 2318.479 kb on - strand, within ABID97_RS11210at 2318.479 kb on - strand, within ABID97_RS11210at 2318.520 kb on + strand, within ABID97_RS11210at 2318.521 kb on - strand, within ABID97_RS11210at 2318.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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2,315,870 + ABID97_RS11195 0.80 +0.2
2,315,871 - ABID97_RS11195 0.80 -0.7
2,316,014 - -0.5
2,316,014 - -0.2
2,316,028 + +0.3
2,316,028 + +0.1
2,316,028 + -0.1
2,316,029 - +1.3
2,316,846 + ABID97_RS11205 0.11 +0.0
2,317,057 - ABID97_RS11205 0.31 +0.5
2,317,267 - ABID97_RS11205 0.51 -0.6
2,317,270 - ABID97_RS11205 0.51 -0.3
2,317,273 - ABID97_RS11205 0.52 -0.2
2,317,540 - ABID97_RS11205 0.78 -0.1
2,317,641 + ABID97_RS11205 0.87 +0.7
2,317,641 + ABID97_RS11205 0.87 +0.6
2,318,337 + ABID97_RS11210 0.63 -0.7
2,318,338 - ABID97_RS11210 0.63 +0.3
2,318,434 - ABID97_RS11210 0.74 +0.4
2,318,478 + ABID97_RS11210 0.78 -1.1
2,318,478 + ABID97_RS11210 0.78 -1.7
2,318,479 - ABID97_RS11210 0.79 -0.1
2,318,479 - ABID97_RS11210 0.79 -0.3
2,318,520 + ABID97_RS11210 0.83 +0.5
2,318,521 - ABID97_RS11210 0.83 -0.6
2,318,669 - -0.3

Or see this region's nucleotide sequence