Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04410 and ABID97_RS04415 are separated by 61 nucleotides ABID97_RS04415 and ABID97_RS04420 are separated by 24 nucleotides ABID97_RS04420 and ABID97_RS04425 are separated by 169 nucleotides
ABID97_RS04410: ABID97_RS04410 - LLM class flavin-dependent oxidoreductase, at 913,077 to 914,063
_RS04410
ABID97_RS04415: ABID97_RS04415 - tRNA 2-thiouridine(34) synthase MnmA, at 914,125 to 915,231
_RS04415
ABID97_RS04420: ABID97_RS04420 - NUDIX hydrolase, at 915,256 to 915,738
_RS04420
ABID97_RS04425: ABID97_RS04425 - response regulator transcription factor, at 915,908 to 916,603
_RS04425
Position (kb) 914
915
916 Strain fitness (log2 ratio) -1
0
1 at 913.369 kb on - strand, within ABID97_RS04410 at 913.620 kb on + strand, within ABID97_RS04410 at 913.674 kb on + strand, within ABID97_RS04410 at 913.716 kb on + strand, within ABID97_RS04410 at 913.716 kb on + strand, within ABID97_RS04410 at 913.717 kb on - strand, within ABID97_RS04410 at 913.717 kb on - strand, within ABID97_RS04410 at 913.717 kb on - strand, within ABID97_RS04410 at 914.028 kb on + strand at 914.029 kb on - strand at 914.124 kb on + strand at 914.124 kb on + strand at 914.125 kb on - strand at 914.125 kb on - strand at 914.125 kb on - strand at 914.125 kb on - strand at 915.470 kb on + strand, within ABID97_RS04420 at 915.470 kb on + strand, within ABID97_RS04420 at 915.470 kb on + strand, within ABID97_RS04420 at 915.470 kb on + strand, within ABID97_RS04420 at 915.471 kb on - strand, within ABID97_RS04420 at 915.471 kb on - strand, within ABID97_RS04420 at 915.471 kb on - strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.521 kb on + strand, within ABID97_RS04420 at 915.522 kb on - strand, within ABID97_RS04420 at 915.522 kb on - strand, within ABID97_RS04420 at 915.522 kb on - strand, within ABID97_RS04420 at 915.522 kb on - strand, within ABID97_RS04420 at 915.522 kb on - strand, within ABID97_RS04420 at 915.892 kb on + strand at 915.892 kb on + strand at 915.893 kb on - strand at 915.909 kb on + strand at 915.910 kb on - strand at 915.910 kb on - strand at 915.910 kb on - strand at 915.911 kb on + strand at 915.911 kb on + strand at 915.912 kb on - strand at 915.912 kb on - strand at 915.912 kb on - strand at 915.912 kb on - strand at 915.912 kb on - strand at 915.919 kb on - strand at 915.919 kb on - strand at 915.924 kb on + strand at 915.924 kb on + strand at 915.924 kb on + strand at 915.960 kb on + strand at 915.960 kb on + strand at 915.960 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 913,369 - ABID97_RS04410 0.30 -0.7 913,620 + ABID97_RS04410 0.55 +0.8 913,674 + ABID97_RS04410 0.60 -0.8 913,716 + ABID97_RS04410 0.65 -0.7 913,716 + ABID97_RS04410 0.65 -0.4 913,717 - ABID97_RS04410 0.65 -0.1 913,717 - ABID97_RS04410 0.65 +0.0 913,717 - ABID97_RS04410 0.65 +1.2 914,028 + +0.0 914,029 - -0.2 914,124 + +0.2 914,124 + -0.3 914,125 - +0.2 914,125 - -1.1 914,125 - -0.4 914,125 - -0.4 915,470 + ABID97_RS04420 0.44 +0.0 915,470 + ABID97_RS04420 0.44 -0.3 915,470 + ABID97_RS04420 0.44 -0.2 915,470 + ABID97_RS04420 0.44 -0.2 915,471 - ABID97_RS04420 0.45 -0.5 915,471 - ABID97_RS04420 0.45 +0.0 915,471 - ABID97_RS04420 0.45 +0.5 915,521 + ABID97_RS04420 0.55 -1.6 915,521 + ABID97_RS04420 0.55 -0.3 915,521 + ABID97_RS04420 0.55 +1.1 915,521 + ABID97_RS04420 0.55 -0.3 915,521 + ABID97_RS04420 0.55 +0.1 915,521 + ABID97_RS04420 0.55 +0.0 915,521 + ABID97_RS04420 0.55 +1.0 915,521 + ABID97_RS04420 0.55 -0.3 915,521 + ABID97_RS04420 0.55 +0.4 915,521 + ABID97_RS04420 0.55 -0.4 915,522 - ABID97_RS04420 0.55 +0.8 915,522 - ABID97_RS04420 0.55 -0.7 915,522 - ABID97_RS04420 0.55 +1.1 915,522 - ABID97_RS04420 0.55 -1.2 915,522 - ABID97_RS04420 0.55 -0.1 915,892 + +0.2 915,892 + -0.1 915,893 - -1.2 915,909 + +0.2 915,910 - -1.3 915,910 - -0.2 915,910 - +0.8 915,911 + -1.3 915,911 + -0.0 915,912 - +0.7 915,912 - -0.1 915,912 - +0.6 915,912 - -0.3 915,912 - +1.2 915,919 - +1.3 915,919 - +1.1 915,924 + -0.8 915,924 + -0.4 915,924 + +0.5 915,960 + -0.3 915,960 + -0.6 915,960 + -0.3
Or see this region's nucleotide sequence