Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04065

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04060 and ABID97_RS04065 are separated by 9 nucleotidesABID97_RS04065 and ABID97_RS04070 are separated by 267 nucleotides ABID97_RS04060: ABID97_RS04060 - IclR family transcriptional regulator, at 832,814 to 833,672 _RS04060 ABID97_RS04065: ABID97_RS04065 - hypothetical protein, at 833,682 to 834,182 _RS04065 ABID97_RS04070: ABID97_RS04070 - aldehyde dehydrogenase family protein, at 834,450 to 835,988 _RS04070 Position (kb) 833 834 835Strain fitness (log2 ratio) -2 -1 0 1at 832.692 kb on + strandat 832.723 kb on + strandat 832.744 kb on + strandat 832.771 kb on - strandat 833.329 kb on - strand, within ABID97_RS04060at 833.337 kb on + strand, within ABID97_RS04060at 833.338 kb on - strand, within ABID97_RS04060at 833.338 kb on - strand, within ABID97_RS04060at 833.349 kb on + strand, within ABID97_RS04060at 833.350 kb on - strand, within ABID97_RS04060at 833.350 kb on - strand, within ABID97_RS04060at 833.350 kb on - strand, within ABID97_RS04060at 834.160 kb on + strandat 834.160 kb on + strandat 834.161 kb on - strandat 834.389 kb on + strandat 834.389 kb on + strandat 834.389 kb on + strandat 834.998 kb on - strand, within ABID97_RS04070

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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832,692 + +0.2
832,723 + +0.6
832,744 + +1.1
832,771 - +0.8
833,329 - ABID97_RS04060 0.60 -0.3
833,337 + ABID97_RS04060 0.61 -0.0
833,338 - ABID97_RS04060 0.61 -0.4
833,338 - ABID97_RS04060 0.61 -1.1
833,349 + ABID97_RS04060 0.62 -2.1
833,350 - ABID97_RS04060 0.62 -0.1
833,350 - ABID97_RS04060 0.62 -0.1
833,350 - ABID97_RS04060 0.62 -0.3
834,160 + +0.2
834,160 + -0.4
834,161 - -0.0
834,389 + -0.2
834,389 + +0.7
834,389 + -0.2
834,998 - ABID97_RS04070 0.36 +0.3

Or see this region's nucleotide sequence