Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00885 and ABID97_RS00890 are separated by 9 nucleotides ABID97_RS00890 and ABID97_RS00895 are separated by 83 nucleotides
ABID97_RS00885: ABID97_RS00885 - tripartite tricarboxylate transporter substrate binding protein, at 178,913 to 179,872
_RS00885
ABID97_RS00890: ABID97_RS00890 - helix-turn-helix transcriptional regulator, at 179,882 to 180,595
_RS00890
ABID97_RS00895: ABID97_RS00895 - cytochrome P450, at 180,679 to 181,851
_RS00895
Position (kb) 179
180
181 Strain fitness (log2 ratio) -1
0
1 at 179.150 kb on + strand, within ABID97_RS00885 at 179.150 kb on + strand, within ABID97_RS00885 at 179.151 kb on - strand, within ABID97_RS00885 at 179.151 kb on - strand, within ABID97_RS00885 at 179.409 kb on - strand, within ABID97_RS00885 at 179.409 kb on - strand, within ABID97_RS00885 at 179.409 kb on - strand, within ABID97_RS00885 at 179.409 kb on - strand, within ABID97_RS00885 at 179.849 kb on + strand at 179.850 kb on - strand at 180.136 kb on - strand, within ABID97_RS00890 at 180.222 kb on + strand, within ABID97_RS00890 at 180.348 kb on + strand, within ABID97_RS00890 at 180.606 kb on + strand at 180.606 kb on + strand at 180.606 kb on + strand at 180.607 kb on - strand at 180.761 kb on - strand at 180.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 179,150 + ABID97_RS00885 0.25 +0.1 179,150 + ABID97_RS00885 0.25 -0.6 179,151 - ABID97_RS00885 0.25 -0.2 179,151 - ABID97_RS00885 0.25 -0.9 179,409 - ABID97_RS00885 0.52 -1.1 179,409 - ABID97_RS00885 0.52 -0.3 179,409 - ABID97_RS00885 0.52 -1.2 179,409 - ABID97_RS00885 0.52 -0.3 179,849 + -0.8 179,850 - +0.1 180,136 - ABID97_RS00890 0.36 -0.7 180,222 + ABID97_RS00890 0.48 -0.3 180,348 + ABID97_RS00890 0.65 -0.6 180,606 + -0.9 180,606 + +1.2 180,606 + +1.4 180,607 - +0.2 180,761 - +0.1 180,761 - -0.1
Or see this region's nucleotide sequence