Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0422 and Echvi_0423 are separated by 3 nucleotides Echvi_0423 and Echvi_0424 are separated by 1 nucleotides
Echvi_0422: Echvi_0422 - Type I site-specific restriction-modification system, R (restriction) subunit and related helicases, at 464,393 to 467,821
_0422
Echvi_0423: Echvi_0423 - Restriction endonuclease S subunits, at 467,825 to 469,027
_0423
Echvi_0424: Echvi_0424 - Type I restriction-modification system methyltransferase subunit, at 469,029 to 470,615
_0424
Position (kb) 467
468
469
470 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 466.889 kb on - strand, within Echvi_0422 at 466.889 kb on - strand, within Echvi_0422 at 466.889 kb on - strand, within Echvi_0422 at 466.890 kb on + strand, within Echvi_0422 at 466.893 kb on + strand, within Echvi_0422 at 466.894 kb on - strand, within Echvi_0422 at 467.034 kb on + strand, within Echvi_0422 at 467.049 kb on - strand, within Echvi_0422 at 467.084 kb on + strand, within Echvi_0422 at 467.103 kb on + strand, within Echvi_0422 at 467.104 kb on - strand, within Echvi_0422 at 467.154 kb on + strand, within Echvi_0422 at 467.157 kb on - strand, within Echvi_0422 at 467.157 kb on - strand, within Echvi_0422 at 467.168 kb on - strand, within Echvi_0422 at 467.189 kb on - strand, within Echvi_0422 at 467.267 kb on - strand, within Echvi_0422 at 467.304 kb on - strand, within Echvi_0422 at 467.386 kb on + strand, within Echvi_0422 at 467.420 kb on - strand, within Echvi_0422 at 467.577 kb on + strand at 467.589 kb on + strand at 467.589 kb on + strand at 467.589 kb on + strand at 467.780 kb on + strand at 467.802 kb on - strand at 467.803 kb on + strand at 467.803 kb on + strand at 467.858 kb on + strand at 467.859 kb on - strand at 467.933 kb on + strand at 467.934 kb on - strand at 467.934 kb on - strand at 467.992 kb on + strand, within Echvi_0423 at 467.992 kb on + strand, within Echvi_0423 at 468.007 kb on + strand, within Echvi_0423 at 468.007 kb on + strand, within Echvi_0423 at 468.007 kb on + strand, within Echvi_0423 at 468.042 kb on - strand, within Echvi_0423 at 468.048 kb on + strand, within Echvi_0423 at 468.048 kb on + strand, within Echvi_0423 at 468.048 kb on + strand, within Echvi_0423 at 468.048 kb on + strand, within Echvi_0423 at 468.049 kb on - strand, within Echvi_0423 at 468.049 kb on - strand, within Echvi_0423 at 468.049 kb on - strand, within Echvi_0423 at 468.070 kb on + strand, within Echvi_0423 at 468.090 kb on + strand, within Echvi_0423 at 468.101 kb on + strand, within Echvi_0423 at 468.104 kb on + strand, within Echvi_0423 at 468.105 kb on - strand, within Echvi_0423 at 468.175 kb on + strand, within Echvi_0423 at 468.175 kb on + strand, within Echvi_0423 at 468.176 kb on - strand, within Echvi_0423 at 468.176 kb on - strand, within Echvi_0423 at 468.214 kb on + strand, within Echvi_0423 at 468.226 kb on + strand, within Echvi_0423 at 468.239 kb on + strand, within Echvi_0423 at 468.239 kb on + strand, within Echvi_0423 at 468.240 kb on - strand, within Echvi_0423 at 468.246 kb on + strand, within Echvi_0423 at 468.275 kb on + strand, within Echvi_0423 at 468.283 kb on + strand, within Echvi_0423 at 468.299 kb on + strand, within Echvi_0423 at 468.325 kb on + strand, within Echvi_0423 at 468.326 kb on - strand, within Echvi_0423 at 468.373 kb on - strand, within Echvi_0423 at 468.406 kb on + strand, within Echvi_0423 at 468.407 kb on - strand, within Echvi_0423 at 468.410 kb on + strand, within Echvi_0423 at 468.411 kb on - strand, within Echvi_0423 at 468.492 kb on + strand, within Echvi_0423 at 468.493 kb on - strand, within Echvi_0423 at 468.592 kb on + strand, within Echvi_0423 at 468.611 kb on + strand, within Echvi_0423 at 468.612 kb on - strand, within Echvi_0423 at 468.617 kb on - strand, within Echvi_0423 at 468.631 kb on + strand, within Echvi_0423 at 468.631 kb on + strand, within Echvi_0423 at 468.688 kb on - strand, within Echvi_0423 at 468.701 kb on - strand, within Echvi_0423 at 468.703 kb on + strand, within Echvi_0423 at 468.704 kb on - strand, within Echvi_0423 at 468.780 kb on + strand, within Echvi_0423 at 468.781 kb on - strand, within Echvi_0423 at 468.781 kb on - strand, within Echvi_0423 at 468.781 kb on - strand, within Echvi_0423 at 468.809 kb on - strand, within Echvi_0423 at 468.844 kb on + strand, within Echvi_0423 at 468.852 kb on + strand, within Echvi_0423 at 468.853 kb on - strand, within Echvi_0423 at 468.861 kb on + strand, within Echvi_0423 at 468.862 kb on - strand, within Echvi_0423 at 468.862 kb on - strand, within Echvi_0423 at 468.881 kb on + strand, within Echvi_0423 at 468.894 kb on - strand, within Echvi_0423 at 468.903 kb on + strand, within Echvi_0423 at 468.907 kb on + strand at 468.982 kb on + strand at 468.982 kb on + strand at 468.991 kb on + strand at 468.992 kb on - strand at 468.992 kb on - strand at 469.027 kb on + strand at 469.038 kb on + strand at 469.059 kb on + strand at 469.062 kb on + strand at 469.094 kb on + strand at 469.094 kb on + strand at 469.123 kb on + strand at 469.139 kb on - strand at 469.139 kb on - strand at 469.139 kb on - strand at 469.160 kb on + strand at 469.167 kb on + strand at 469.174 kb on + strand at 469.368 kb on + strand, within Echvi_0424 at 469.410 kb on - strand, within Echvi_0424 at 469.427 kb on + strand, within Echvi_0424 at 469.450 kb on + strand, within Echvi_0424 at 469.479 kb on - strand, within Echvi_0424 at 469.479 kb on - strand, within Echvi_0424 at 469.534 kb on - strand, within Echvi_0424 at 469.553 kb on + strand, within Echvi_0424 at 469.602 kb on - strand, within Echvi_0424 at 469.677 kb on + strand, within Echvi_0424 at 469.678 kb on - strand, within Echvi_0424 at 469.678 kb on - strand, within Echvi_0424 at 469.805 kb on + strand, within Echvi_0424 at 469.929 kb on - strand, within Echvi_0424 at 469.999 kb on + strand, within Echvi_0424 at 470.000 kb on - strand, within Echvi_0424 at 470.000 kb on - strand, within Echvi_0424 at 470.000 kb on - strand, within Echvi_0424 at 470.000 kb on - strand, within Echvi_0424 at 470.000 kb on - strand, within Echvi_0424
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 466,889 - Echvi_0422 0.73 -1.6 466,889 - Echvi_0422 0.73 -1.0 466,889 - Echvi_0422 0.73 +0.2 466,890 + Echvi_0422 0.73 -0.1 466,893 + Echvi_0422 0.73 +0.2 466,894 - Echvi_0422 0.73 -0.1 467,034 + Echvi_0422 0.77 +0.0 467,049 - Echvi_0422 0.77 +0.2 467,084 + Echvi_0422 0.78 +1.1 467,103 + Echvi_0422 0.79 -0.0 467,104 - Echvi_0422 0.79 +0.3 467,154 + Echvi_0422 0.81 -0.2 467,157 - Echvi_0422 0.81 -0.6 467,157 - Echvi_0422 0.81 +0.2 467,168 - Echvi_0422 0.81 -1.4 467,189 - Echvi_0422 0.82 -0.2 467,267 - Echvi_0422 0.84 -0.6 467,304 - Echvi_0422 0.85 -1.1 467,386 + Echvi_0422 0.87 +1.1 467,420 - Echvi_0422 0.88 +1.2 467,577 + +0.5 467,589 + -0.7 467,589 + -2.2 467,589 + +0.7 467,780 + -0.3 467,802 - +1.8 467,803 + -1.1 467,803 + +0.1 467,858 + +0.7 467,859 - +1.2 467,933 + -0.6 467,934 - -1.3 467,934 - -0.4 467,992 + Echvi_0423 0.14 -0.4 467,992 + Echvi_0423 0.14 +2.8 468,007 + Echvi_0423 0.15 -0.7 468,007 + Echvi_0423 0.15 -0.2 468,007 + Echvi_0423 0.15 +0.2 468,042 - Echvi_0423 0.18 -1.9 468,048 + Echvi_0423 0.19 +0.8 468,048 + Echvi_0423 0.19 +0.6 468,048 + Echvi_0423 0.19 -0.9 468,048 + Echvi_0423 0.19 -0.2 468,049 - Echvi_0423 0.19 -0.2 468,049 - Echvi_0423 0.19 -1.0 468,049 - Echvi_0423 0.19 -1.0 468,070 + Echvi_0423 0.20 +0.3 468,090 + Echvi_0423 0.22 -0.4 468,101 + Echvi_0423 0.23 -0.2 468,104 + Echvi_0423 0.23 -0.2 468,105 - Echvi_0423 0.23 -0.2 468,175 + Echvi_0423 0.29 +1.6 468,175 + Echvi_0423 0.29 -0.2 468,176 - Echvi_0423 0.29 -0.2 468,176 - Echvi_0423 0.29 -0.5 468,214 + Echvi_0423 0.32 -0.8 468,226 + Echvi_0423 0.33 +1.0 468,239 + Echvi_0423 0.34 -0.2 468,239 + Echvi_0423 0.34 +0.2 468,240 - Echvi_0423 0.34 +0.1 468,246 + Echvi_0423 0.35 +0.1 468,275 + Echvi_0423 0.37 -0.4 468,283 + Echvi_0423 0.38 -0.5 468,299 + Echvi_0423 0.39 -1.0 468,325 + Echvi_0423 0.42 -1.5 468,326 - Echvi_0423 0.42 +0.4 468,373 - Echvi_0423 0.46 -1.7 468,406 + Echvi_0423 0.48 -0.1 468,407 - Echvi_0423 0.48 +0.6 468,410 + Echvi_0423 0.49 -0.3 468,411 - Echvi_0423 0.49 -0.7 468,492 + Echvi_0423 0.55 -0.5 468,493 - Echvi_0423 0.56 -0.8 468,592 + Echvi_0423 0.64 -2.6 468,611 + Echvi_0423 0.65 -0.3 468,612 - Echvi_0423 0.65 -0.5 468,617 - Echvi_0423 0.66 -0.9 468,631 + Echvi_0423 0.67 +0.4 468,631 + Echvi_0423 0.67 -0.4 468,688 - Echvi_0423 0.72 +0.2 468,701 - Echvi_0423 0.73 -2.1 468,703 + Echvi_0423 0.73 +0.2 468,704 - Echvi_0423 0.73 +0.2 468,780 + Echvi_0423 0.79 +0.7 468,781 - Echvi_0423 0.79 -0.5 468,781 - Echvi_0423 0.79 -0.7 468,781 - Echvi_0423 0.79 -0.6 468,809 - Echvi_0423 0.82 -0.4 468,844 + Echvi_0423 0.85 -0.5 468,852 + Echvi_0423 0.85 -0.3 468,853 - Echvi_0423 0.85 +0.2 468,861 + Echvi_0423 0.86 +1.8 468,862 - Echvi_0423 0.86 -0.7 468,862 - Echvi_0423 0.86 +0.2 468,881 + Echvi_0423 0.88 -0.0 468,894 - Echvi_0423 0.89 -1.7 468,903 + Echvi_0423 0.90 -0.3 468,907 + -0.5 468,982 + +1.0 468,982 + +1.2 468,991 + +0.9 468,992 - -0.0 468,992 - +0.2 469,027 + +0.1 469,038 + -0.2 469,059 + -1.6 469,062 + -0.2 469,094 + +0.1 469,094 + -0.0 469,123 + +0.5 469,139 - +0.5 469,139 - -0.0 469,139 - +1.5 469,160 + +0.1 469,167 + -0.6 469,174 + -0.4 469,368 + Echvi_0424 0.21 +0.1 469,410 - Echvi_0424 0.24 +0.1 469,427 + Echvi_0424 0.25 +0.2 469,450 + Echvi_0424 0.27 +0.1 469,479 - Echvi_0424 0.28 +0.3 469,479 - Echvi_0424 0.28 +0.1 469,534 - Echvi_0424 0.32 -0.4 469,553 + Echvi_0424 0.33 -0.2 469,602 - Echvi_0424 0.36 -0.3 469,677 + Echvi_0424 0.41 +0.1 469,678 - Echvi_0424 0.41 -0.4 469,678 - Echvi_0424 0.41 -1.0 469,805 + Echvi_0424 0.49 -0.0 469,929 - Echvi_0424 0.57 -0.2 469,999 + Echvi_0424 0.61 -0.8 470,000 - Echvi_0424 0.61 -1.3 470,000 - Echvi_0424 0.61 -0.1 470,000 - Echvi_0424 0.61 +0.7 470,000 - Echvi_0424 0.61 -0.4 470,000 - Echvi_0424 0.61 -0.1
Or see this region's nucleotide sequence