Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19525

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19520 and CA264_19525 are separated by 88 nucleotidesCA264_19525 and CA264_19530 are separated by 100 nucleotidesCA264_19530 and CA264_19535 are separated by 4 nucleotides CA264_19520: CA264_19520 - hypothetical protein, at 4,509,582 to 4,511,963 _19520 CA264_19525: CA264_19525 - phosphatase, at 4,512,052 to 4,512,990 _19525 CA264_19530: CA264_19530 - hypothetical protein, at 4,513,091 to 4,513,534 _19530 CA264_19535: CA264_19535 - hypothetical protein, at 4,513,539 to 4,514,108 _19535 Position (kb) 4512 4513Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4511.063 kb on - strand, within CA264_19520at 4511.168 kb on + strand, within CA264_19520at 4511.169 kb on - strand, within CA264_19520at 4511.291 kb on + strand, within CA264_19520at 4511.296 kb on - strand, within CA264_19520at 4511.296 kb on - strand, within CA264_19520at 4511.298 kb on - strand, within CA264_19520at 4511.436 kb on - strand, within CA264_19520at 4511.462 kb on + strand, within CA264_19520at 4511.521 kb on - strand, within CA264_19520at 4511.552 kb on + strand, within CA264_19520at 4511.568 kb on + strand, within CA264_19520at 4511.610 kb on + strand, within CA264_19520at 4511.611 kb on - strand, within CA264_19520at 4511.630 kb on + strand, within CA264_19520at 4511.630 kb on + strand, within CA264_19520at 4511.658 kb on + strand, within CA264_19520at 4511.705 kb on - strand, within CA264_19520at 4511.712 kb on + strand, within CA264_19520at 4511.779 kb on - strandat 4511.803 kb on + strandat 4511.962 kb on - strandat 4511.987 kb on - strandat 4512.099 kb on - strandat 4512.112 kb on + strandat 4512.129 kb on - strandat 4512.156 kb on + strand, within CA264_19525at 4512.248 kb on - strand, within CA264_19525at 4512.248 kb on - strand, within CA264_19525at 4512.266 kb on - strand, within CA264_19525at 4512.276 kb on + strand, within CA264_19525at 4512.368 kb on - strand, within CA264_19525at 4512.384 kb on + strand, within CA264_19525at 4512.386 kb on + strand, within CA264_19525at 4512.386 kb on + strand, within CA264_19525at 4512.387 kb on - strand, within CA264_19525at 4512.387 kb on - strand, within CA264_19525at 4512.387 kb on - strand, within CA264_19525at 4512.431 kb on + strand, within CA264_19525at 4512.486 kb on + strand, within CA264_19525at 4512.487 kb on - strand, within CA264_19525at 4512.487 kb on - strand, within CA264_19525at 4512.633 kb on - strand, within CA264_19525at 4512.633 kb on - strand, within CA264_19525at 4512.668 kb on - strand, within CA264_19525at 4512.679 kb on + strand, within CA264_19525at 4512.679 kb on + strand, within CA264_19525at 4512.680 kb on - strand, within CA264_19525at 4512.680 kb on - strand, within CA264_19525at 4512.680 kb on - strand, within CA264_19525at 4512.681 kb on + strand, within CA264_19525at 4512.699 kb on + strand, within CA264_19525at 4512.700 kb on - strand, within CA264_19525at 4512.700 kb on - strand, within CA264_19525at 4512.785 kb on - strand, within CA264_19525at 4512.898 kb on + strandat 4513.004 kb on - strandat 4513.016 kb on + strandat 4513.016 kb on + strandat 4513.087 kb on + strandat 4513.088 kb on - strandat 4513.227 kb on + strand, within CA264_19530at 4513.257 kb on + strand, within CA264_19530at 4513.271 kb on + strand, within CA264_19530at 4513.271 kb on + strand, within CA264_19530at 4513.289 kb on + strand, within CA264_19530at 4513.290 kb on - strand, within CA264_19530at 4513.290 kb on - strand, within CA264_19530at 4513.290 kb on - strand, within CA264_19530at 4513.290 kb on - strand, within CA264_19530at 4513.296 kb on + strand, within CA264_19530at 4513.296 kb on + strand, within CA264_19530at 4513.297 kb on - strand, within CA264_19530at 4513.297 kb on - strand, within CA264_19530at 4513.300 kb on - strand, within CA264_19530at 4513.483 kb on - strand, within CA264_19530at 4513.527 kb on + strandat 4513.527 kb on + strandat 4513.527 kb on + strandat 4513.564 kb on + strandat 4513.564 kb on + strandat 4513.677 kb on - strand, within CA264_19535at 4513.677 kb on - strand, within CA264_19535at 4513.732 kb on + strand, within CA264_19535at 4513.733 kb on - strand, within CA264_19535at 4513.802 kb on + strand, within CA264_19535at 4513.803 kb on - strand, within CA264_19535at 4513.833 kb on + strand, within CA264_19535at 4513.850 kb on + strand, within CA264_19535at 4513.979 kb on + strand, within CA264_19535at 4513.979 kb on + strand, within CA264_19535

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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4,511,063 - CA264_19520 0.62 -1.4
4,511,168 + CA264_19520 0.67 +1.1
4,511,169 - CA264_19520 0.67 +3.5
4,511,291 + CA264_19520 0.72 -0.4
4,511,296 - CA264_19520 0.72 +0.5
4,511,296 - CA264_19520 0.72 +0.8
4,511,298 - CA264_19520 0.72 -1.0
4,511,436 - CA264_19520 0.78 -0.3
4,511,462 + CA264_19520 0.79 -0.6
4,511,521 - CA264_19520 0.81 +1.1
4,511,552 + CA264_19520 0.83 -0.0
4,511,568 + CA264_19520 0.83 +0.6
4,511,610 + CA264_19520 0.85 -0.4
4,511,611 - CA264_19520 0.85 -0.4
4,511,630 + CA264_19520 0.86 +0.9
4,511,630 + CA264_19520 0.86 +0.0
4,511,658 + CA264_19520 0.87 -0.9
4,511,705 - CA264_19520 0.89 -0.4
4,511,712 + CA264_19520 0.89 +0.0
4,511,779 - -0.1
4,511,803 + -0.8
4,511,962 - +0.1
4,511,987 - -0.2
4,512,099 - +0.1
4,512,112 + +0.4
4,512,129 - -0.4
4,512,156 + CA264_19525 0.11 +0.7
4,512,248 - CA264_19525 0.21 -0.2
4,512,248 - CA264_19525 0.21 -1.2
4,512,266 - CA264_19525 0.23 -1.7
4,512,276 + CA264_19525 0.24 +0.9
4,512,368 - CA264_19525 0.34 +0.2
4,512,384 + CA264_19525 0.35 -0.1
4,512,386 + CA264_19525 0.36 -0.6
4,512,386 + CA264_19525 0.36 +1.1
4,512,387 - CA264_19525 0.36 -0.4
4,512,387 - CA264_19525 0.36 -2.2
4,512,387 - CA264_19525 0.36 -0.9
4,512,431 + CA264_19525 0.40 -0.4
4,512,486 + CA264_19525 0.46 -0.9
4,512,487 - CA264_19525 0.46 -1.6
4,512,487 - CA264_19525 0.46 +0.6
4,512,633 - CA264_19525 0.62 -0.3
4,512,633 - CA264_19525 0.62 -0.4
4,512,668 - CA264_19525 0.66 -1.4
4,512,679 + CA264_19525 0.67 -1.6
4,512,679 + CA264_19525 0.67 +0.8
4,512,680 - CA264_19525 0.67 -0.4
4,512,680 - CA264_19525 0.67 -0.8
4,512,680 - CA264_19525 0.67 -0.0
4,512,681 + CA264_19525 0.67 -0.2
4,512,699 + CA264_19525 0.69 -0.7
4,512,700 - CA264_19525 0.69 -0.4
4,512,700 - CA264_19525 0.69 -0.4
4,512,785 - CA264_19525 0.78 -2.8
4,512,898 + +1.1
4,513,004 - -1.5
4,513,016 + -0.9
4,513,016 + -0.8
4,513,087 + +1.1
4,513,088 - +0.3
4,513,227 + CA264_19530 0.31 -0.9
4,513,257 + CA264_19530 0.37 -0.4
4,513,271 + CA264_19530 0.41 +0.6
4,513,271 + CA264_19530 0.41 +0.0
4,513,289 + CA264_19530 0.45 -1.2
4,513,290 - CA264_19530 0.45 -0.0
4,513,290 - CA264_19530 0.45 -1.0
4,513,290 - CA264_19530 0.45 +1.1
4,513,290 - CA264_19530 0.45 +0.4
4,513,296 + CA264_19530 0.46 +1.0
4,513,296 + CA264_19530 0.46 -0.8
4,513,297 - CA264_19530 0.46 -2.3
4,513,297 - CA264_19530 0.46 -0.5
4,513,300 - CA264_19530 0.47 -0.4
4,513,483 - CA264_19530 0.88 -0.9
4,513,527 + +0.7
4,513,527 + +0.7
4,513,527 + -0.5
4,513,564 + +0.0
4,513,564 + +0.1
4,513,677 - CA264_19535 0.24 +0.3
4,513,677 - CA264_19535 0.24 -0.4
4,513,732 + CA264_19535 0.34 +0.6
4,513,733 - CA264_19535 0.34 -0.3
4,513,802 + CA264_19535 0.46 +0.3
4,513,803 - CA264_19535 0.46 -0.7
4,513,833 + CA264_19535 0.52 +0.6
4,513,850 + CA264_19535 0.55 -0.6
4,513,979 + CA264_19535 0.77 +0.1
4,513,979 + CA264_19535 0.77 +2.7

Or see this region's nucleotide sequence