Experiment: m.b. Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19210 and CA264_19215 are separated by 308 nucleotides CA264_19215 and CA264_19220 are separated by 27 nucleotides CA264_19220 and CA264_19225 are separated by 6 nucleotides CA264_19225 and CA264_19230 overlap by 4 nucleotides
CA264_19210: CA264_19210 - SAM-dependent methyltransferase, at 4,463,357 to 4,464,097
_19210
CA264_19215: CA264_19215 - RNA polymerase subunit sigma, at 4,464,406 to 4,464,999
_19215
CA264_19220: CA264_19220 - hypothetical protein, at 4,465,027 to 4,465,308
_19220
CA264_19225: CA264_19225 - guanylate kinase, at 4,465,315 to 4,465,899
_19225
CA264_19230: CA264_19230 - nicotinate-nicotinamide nucleotide adenylyltransferase, at 4,465,896 to 4,466,468
_19230
Position (kb)
4465
4466 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4464.030 kb on - strand at 4464.064 kb on + strand at 4464.064 kb on + strand at 4464.141 kb on + strand at 4464.141 kb on + strand at 4464.142 kb on - strand at 4464.145 kb on + strand at 4464.146 kb on - strand at 4464.146 kb on - strand at 4464.146 kb on - strand at 4464.172 kb on - strand at 4464.175 kb on + strand at 4464.186 kb on - strand at 4464.186 kb on - strand at 4464.233 kb on - strand at 4464.236 kb on + strand at 4464.270 kb on - strand at 4464.270 kb on - strand at 4464.271 kb on + strand at 4464.279 kb on + strand at 4464.338 kb on - strand at 4464.347 kb on - strand at 4464.360 kb on - strand at 4464.398 kb on + strand at 4464.399 kb on - strand at 4464.433 kb on - strand at 4464.436 kb on - strand at 4464.494 kb on - strand, within CA264_19215 at 4464.505 kb on + strand, within CA264_19215 at 4464.519 kb on - strand, within CA264_19215 at 4464.545 kb on + strand, within CA264_19215 at 4464.556 kb on + strand, within CA264_19215 at 4464.556 kb on + strand, within CA264_19215 at 4464.557 kb on - strand, within CA264_19215 at 4464.569 kb on - strand, within CA264_19215 at 4464.600 kb on + strand, within CA264_19215 at 4464.710 kb on - strand, within CA264_19215 at 4464.710 kb on - strand, within CA264_19215 at 4464.834 kb on + strand, within CA264_19215 at 4464.846 kb on + strand, within CA264_19215 at 4464.908 kb on + strand, within CA264_19215 at 4464.918 kb on - strand, within CA264_19215 at 4464.975 kb on + strand at 4464.976 kb on - strand at 4464.991 kb on - strand at 4465.023 kb on + strand at 4465.049 kb on + strand at 4465.097 kb on + strand, within CA264_19220 at 4465.109 kb on + strand, within CA264_19220 at 4465.110 kb on - strand, within CA264_19220 at 4465.167 kb on + strand, within CA264_19220 at 4465.264 kb on - strand, within CA264_19220 at 4465.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml remove 4,464,030 - -0.2 4,464,064 + -2.9 4,464,064 + -2.4 4,464,141 + -1.9 4,464,141 + -0.6 4,464,142 - +0.4 4,464,145 + -1.0 4,464,146 - -1.7 4,464,146 - -0.7 4,464,146 - -1.1 4,464,172 - +0.1 4,464,175 + -1.0 4,464,186 - -1.0 4,464,186 - -1.1 4,464,233 - -1.2 4,464,236 + -1.9 4,464,270 - -0.5 4,464,270 - -1.4 4,464,271 + -0.6 4,464,279 + -2.3 4,464,338 - -0.2 4,464,347 - -0.6 4,464,360 - -2.0 4,464,398 + -0.7 4,464,399 - -1.1 4,464,433 - -0.4 4,464,436 - -1.0 4,464,494 - CA264_19215 0.15 -0.9 4,464,505 + CA264_19215 0.17 -0.0 4,464,519 - CA264_19215 0.19 -0.9 4,464,545 + CA264_19215 0.23 -2.3 4,464,556 + CA264_19215 0.25 -0.6 4,464,556 + CA264_19215 0.25 -2.4 4,464,557 - CA264_19215 0.25 -0.4 4,464,569 - CA264_19215 0.27 -0.2 4,464,600 + CA264_19215 0.33 +1.1 4,464,710 - CA264_19215 0.51 +0.2 4,464,710 - CA264_19215 0.51 -0.4 4,464,834 + CA264_19215 0.72 -0.5 4,464,846 + CA264_19215 0.74 -0.1 4,464,908 + CA264_19215 0.85 -1.9 4,464,918 - CA264_19215 0.86 -0.9 4,464,975 + -0.4 4,464,976 - -1.4 4,464,991 - -1.2 4,465,023 + -0.3 4,465,049 + -1.9 4,465,097 + CA264_19220 0.25 -0.9 4,465,109 + CA264_19220 0.29 -0.7 4,465,110 - CA264_19220 0.29 -0.9 4,465,167 + CA264_19220 0.50 -0.1 4,465,264 - CA264_19220 0.84 +0.0 4,465,305 - +0.5
Or see this region's nucleotide sequence