Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18585

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18580 and CA264_18585 are separated by 48 nucleotidesCA264_18585 and CA264_18590 are separated by 112 nucleotides CA264_18580: CA264_18580 - hypothetical protein, at 4,321,388 to 4,322,287 _18580 CA264_18585: CA264_18585 - hypothetical protein, at 4,322,336 to 4,322,554 _18585 CA264_18590: CA264_18590 - hypothetical protein, at 4,322,667 to 4,323,035 _18590 Position (kb) 4322 4323Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4321.349 kb on - strandat 4321.361 kb on + strandat 4321.361 kb on + strandat 4321.361 kb on + strandat 4321.362 kb on - strandat 4321.369 kb on + strandat 4321.370 kb on - strandat 4321.371 kb on + strandat 4321.371 kb on + strandat 4321.372 kb on - strandat 4321.387 kb on + strandat 4321.427 kb on + strandat 4321.427 kb on + strandat 4321.462 kb on + strandat 4321.475 kb on + strandat 4321.475 kb on + strandat 4321.475 kb on + strandat 4321.481 kb on - strand, within CA264_18580at 4321.495 kb on + strand, within CA264_18580at 4321.500 kb on + strand, within CA264_18580at 4321.500 kb on + strand, within CA264_18580at 4321.501 kb on - strand, within CA264_18580at 4321.501 kb on - strand, within CA264_18580at 4321.501 kb on - strand, within CA264_18580at 4321.501 kb on - strand, within CA264_18580at 4321.501 kb on - strand, within CA264_18580at 4321.506 kb on + strand, within CA264_18580at 4321.507 kb on - strand, within CA264_18580at 4321.507 kb on - strand, within CA264_18580at 4321.520 kb on + strand, within CA264_18580at 4321.528 kb on - strand, within CA264_18580at 4321.531 kb on + strand, within CA264_18580at 4321.531 kb on + strand, within CA264_18580at 4321.532 kb on - strand, within CA264_18580at 4321.534 kb on + strand, within CA264_18580at 4321.534 kb on + strand, within CA264_18580at 4321.556 kb on + strand, within CA264_18580at 4321.560 kb on + strand, within CA264_18580at 4321.560 kb on + strand, within CA264_18580at 4321.560 kb on + strand, within CA264_18580at 4321.560 kb on + strand, within CA264_18580at 4321.561 kb on - strand, within CA264_18580at 4321.594 kb on + strand, within CA264_18580at 4321.597 kb on + strand, within CA264_18580at 4321.597 kb on + strand, within CA264_18580at 4321.597 kb on + strand, within CA264_18580at 4321.597 kb on + strand, within CA264_18580at 4321.598 kb on - strand, within CA264_18580at 4321.599 kb on + strand, within CA264_18580at 4321.600 kb on - strand, within CA264_18580at 4321.600 kb on - strand, within CA264_18580at 4321.600 kb on - strand, within CA264_18580at 4321.600 kb on - strand, within CA264_18580at 4321.609 kb on - strand, within CA264_18580at 4321.618 kb on - strand, within CA264_18580at 4321.639 kb on + strand, within CA264_18580at 4321.639 kb on + strand, within CA264_18580at 4321.641 kb on + strand, within CA264_18580at 4321.641 kb on + strand, within CA264_18580at 4321.642 kb on - strand, within CA264_18580at 4321.642 kb on - strand, within CA264_18580at 4321.645 kb on + strand, within CA264_18580at 4321.657 kb on + strand, within CA264_18580at 4321.666 kb on - strand, within CA264_18580at 4321.678 kb on + strand, within CA264_18580at 4321.678 kb on + strand, within CA264_18580at 4321.685 kb on - strand, within CA264_18580at 4321.687 kb on + strand, within CA264_18580at 4321.687 kb on + strand, within CA264_18580at 4321.688 kb on - strand, within CA264_18580at 4321.688 kb on - strand, within CA264_18580at 4321.694 kb on + strand, within CA264_18580at 4321.696 kb on + strand, within CA264_18580at 4321.709 kb on + strand, within CA264_18580at 4321.709 kb on + strand, within CA264_18580at 4321.710 kb on - strand, within CA264_18580at 4321.712 kb on + strand, within CA264_18580at 4321.713 kb on - strand, within CA264_18580at 4321.739 kb on + strand, within CA264_18580at 4321.739 kb on + strand, within CA264_18580at 4321.739 kb on + strand, within CA264_18580at 4321.740 kb on - strand, within CA264_18580at 4321.740 kb on - strand, within CA264_18580at 4321.740 kb on - strand, within CA264_18580at 4321.740 kb on - strand, within CA264_18580at 4321.772 kb on + strand, within CA264_18580at 4321.772 kb on + strand, within CA264_18580at 4321.772 kb on + strand, within CA264_18580at 4321.773 kb on - strand, within CA264_18580at 4321.773 kb on - strand, within CA264_18580at 4321.802 kb on + strand, within CA264_18580at 4321.813 kb on - strand, within CA264_18580at 4321.840 kb on + strand, within CA264_18580at 4321.840 kb on + strand, within CA264_18580at 4321.841 kb on - strand, within CA264_18580at 4321.841 kb on - strand, within CA264_18580at 4321.841 kb on - strand, within CA264_18580at 4321.843 kb on - strand, within CA264_18580at 4321.861 kb on + strand, within CA264_18580at 4321.885 kb on + strand, within CA264_18580at 4321.885 kb on + strand, within CA264_18580at 4321.891 kb on + strand, within CA264_18580at 4321.962 kb on - strand, within CA264_18580at 4321.963 kb on + strand, within CA264_18580at 4321.970 kb on - strand, within CA264_18580at 4322.000 kb on - strand, within CA264_18580at 4322.000 kb on - strand, within CA264_18580at 4322.033 kb on - strand, within CA264_18580at 4322.033 kb on - strand, within CA264_18580at 4322.043 kb on + strand, within CA264_18580at 4322.062 kb on + strand, within CA264_18580at 4322.062 kb on + strand, within CA264_18580at 4322.063 kb on - strand, within CA264_18580at 4322.077 kb on - strand, within CA264_18580at 4322.112 kb on + strand, within CA264_18580at 4322.152 kb on + strand, within CA264_18580at 4322.169 kb on - strand, within CA264_18580at 4322.180 kb on - strand, within CA264_18580at 4322.191 kb on + strand, within CA264_18580at 4322.202 kb on + strandat 4322.236 kb on + strandat 4322.238 kb on + strandat 4322.248 kb on - strandat 4322.280 kb on - strandat 4322.285 kb on + strandat 4322.291 kb on - strandat 4322.295 kb on - strandat 4322.309 kb on - strandat 4322.330 kb on + strandat 4322.331 kb on - strandat 4322.333 kb on + strandat 4322.333 kb on + strandat 4322.334 kb on - strandat 4322.334 kb on - strandat 4322.334 kb on - strandat 4322.337 kb on + strandat 4322.354 kb on + strandat 4322.354 kb on + strandat 4322.355 kb on - strandat 4322.421 kb on + strand, within CA264_18585at 4322.426 kb on + strand, within CA264_18585at 4322.426 kb on + strand, within CA264_18585at 4322.431 kb on + strand, within CA264_18585at 4322.432 kb on - strand, within CA264_18585at 4322.432 kb on - strand, within CA264_18585at 4322.437 kb on + strand, within CA264_18585at 4322.442 kb on + strand, within CA264_18585at 4322.479 kb on + strand, within CA264_18585at 4322.480 kb on - strand, within CA264_18585at 4322.528 kb on - strand, within CA264_18585at 4322.531 kb on + strand, within CA264_18585at 4322.573 kb on - strandat 4322.591 kb on - strandat 4322.591 kb on - strandat 4322.617 kb on - strandat 4322.618 kb on + strandat 4322.640 kb on + strandat 4322.642 kb on + strandat 4322.643 kb on - strandat 4322.673 kb on - strandat 4322.718 kb on + strand, within CA264_18590at 4322.723 kb on + strand, within CA264_18590at 4322.724 kb on - strand, within CA264_18590at 4322.764 kb on + strand, within CA264_18590at 4322.782 kb on + strand, within CA264_18590at 4322.782 kb on + strand, within CA264_18590at 4322.782 kb on + strand, within CA264_18590at 4322.783 kb on - strand, within CA264_18590at 4322.783 kb on - strand, within CA264_18590at 4322.783 kb on - strand, within CA264_18590at 4322.783 kb on - strand, within CA264_18590at 4322.786 kb on + strand, within CA264_18590at 4322.786 kb on + strand, within CA264_18590at 4322.787 kb on - strand, within CA264_18590at 4322.787 kb on - strand, within CA264_18590at 4322.797 kb on + strand, within CA264_18590at 4322.801 kb on - strand, within CA264_18590at 4322.857 kb on + strand, within CA264_18590at 4322.857 kb on + strand, within CA264_18590at 4322.857 kb on + strand, within CA264_18590at 4322.892 kb on + strand, within CA264_18590at 4322.904 kb on + strand, within CA264_18590at 4322.905 kb on - strand, within CA264_18590at 4322.907 kb on - strand, within CA264_18590at 4322.937 kb on + strand, within CA264_18590at 4322.938 kb on - strand, within CA264_18590at 4322.954 kb on + strand, within CA264_18590at 4322.954 kb on + strand, within CA264_18590at 4322.960 kb on + strand, within CA264_18590at 4323.018 kb on - strandat 4323.041 kb on - strandat 4323.079 kb on - strandat 4323.092 kb on + strandat 4323.119 kb on - strandat 4323.172 kb on + strandat 4323.241 kb on + strandat 4323.241 kb on + strandat 4323.242 kb on - strandat 4323.245 kb on - strandat 4323.248 kb on + strandat 4323.258 kb on + strandat 4323.286 kb on - strandat 4323.295 kb on + strandat 4323.295 kb on + strandat 4323.296 kb on - strandat 4323.328 kb on - strandat 4323.330 kb on - strandat 4323.342 kb on - strandat 4323.359 kb on - strandat 4323.363 kb on - strandat 4323.364 kb on + strandat 4323.364 kb on + strandat 4323.365 kb on - strandat 4323.427 kb on + strandat 4323.427 kb on + strandat 4323.444 kb on + strandat 4323.444 kb on + strandat 4323.444 kb on + strandat 4323.491 kb on + strandat 4323.491 kb on + strandat 4323.491 kb on + strandat 4323.492 kb on - strandat 4323.492 kb on - strandat 4323.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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4,321,349 - -0.5
4,321,361 + -0.3
4,321,361 + +1.2
4,321,361 + -0.6
4,321,362 - -0.2
4,321,369 + -0.3
4,321,370 - -0.4
4,321,371 + +0.2
4,321,371 + +1.2
4,321,372 - +0.2
4,321,387 + -0.5
4,321,427 + +0.5
4,321,427 + +1.8
4,321,462 + -1.1
4,321,475 + -1.1
4,321,475 + +1.2
4,321,475 + +0.3
4,321,481 - CA264_18580 0.10 -0.2
4,321,495 + CA264_18580 0.12 -0.3
4,321,500 + CA264_18580 0.12 -0.1
4,321,500 + CA264_18580 0.12 -0.3
4,321,501 - CA264_18580 0.13 +0.8
4,321,501 - CA264_18580 0.13 -0.4
4,321,501 - CA264_18580 0.13 +0.0
4,321,501 - CA264_18580 0.13 +0.6
4,321,501 - CA264_18580 0.13 -0.8
4,321,506 + CA264_18580 0.13 -0.3
4,321,507 - CA264_18580 0.13 -0.3
4,321,507 - CA264_18580 0.13 +0.2
4,321,520 + CA264_18580 0.15 +0.4
4,321,528 - CA264_18580 0.16 +0.5
4,321,531 + CA264_18580 0.16 +0.3
4,321,531 + CA264_18580 0.16 +0.6
4,321,532 - CA264_18580 0.16 -2.8
4,321,534 + CA264_18580 0.16 -0.3
4,321,534 + CA264_18580 0.16 +1.2
4,321,556 + CA264_18580 0.19 +0.3
4,321,560 + CA264_18580 0.19 -0.8
4,321,560 + CA264_18580 0.19 -1.2
4,321,560 + CA264_18580 0.19 -1.1
4,321,560 + CA264_18580 0.19 -0.6
4,321,561 - CA264_18580 0.19 -0.6
4,321,594 + CA264_18580 0.23 -0.3
4,321,597 + CA264_18580 0.23 -0.9
4,321,597 + CA264_18580 0.23 -0.3
4,321,597 + CA264_18580 0.23 +0.6
4,321,597 + CA264_18580 0.23 +1.2
4,321,598 - CA264_18580 0.23 -1.4
4,321,599 + CA264_18580 0.23 +0.2
4,321,600 - CA264_18580 0.24 -0.6
4,321,600 - CA264_18580 0.24 +0.2
4,321,600 - CA264_18580 0.24 +0.2
4,321,600 - CA264_18580 0.24 -0.3
4,321,609 - CA264_18580 0.25 -2.9
4,321,618 - CA264_18580 0.26 -2.1
4,321,639 + CA264_18580 0.28 -0.7
4,321,639 + CA264_18580 0.28 -0.3
4,321,641 + CA264_18580 0.28 -0.3
4,321,641 + CA264_18580 0.28 -1.2
4,321,642 - CA264_18580 0.28 +2.8
4,321,642 - CA264_18580 0.28 +0.4
4,321,645 + CA264_18580 0.29 -1.4
4,321,657 + CA264_18580 0.30 +0.4
4,321,666 - CA264_18580 0.31 -0.2
4,321,678 + CA264_18580 0.32 +1.2
4,321,678 + CA264_18580 0.32 -0.2
4,321,685 - CA264_18580 0.33 -0.5
4,321,687 + CA264_18580 0.33 +0.2
4,321,687 + CA264_18580 0.33 +0.5
4,321,688 - CA264_18580 0.33 -1.6
4,321,688 - CA264_18580 0.33 -0.8
4,321,694 + CA264_18580 0.34 +0.2
4,321,696 + CA264_18580 0.34 -0.4
4,321,709 + CA264_18580 0.36 -0.2
4,321,709 + CA264_18580 0.36 -0.1
4,321,710 - CA264_18580 0.36 +0.3
4,321,712 + CA264_18580 0.36 +0.3
4,321,713 - CA264_18580 0.36 +0.1
4,321,739 + CA264_18580 0.39 +0.2
4,321,739 + CA264_18580 0.39 +0.0
4,321,739 + CA264_18580 0.39 -0.3
4,321,740 - CA264_18580 0.39 +0.5
4,321,740 - CA264_18580 0.39 -0.4
4,321,740 - CA264_18580 0.39 -0.7
4,321,740 - CA264_18580 0.39 -0.8
4,321,772 + CA264_18580 0.43 +1.8
4,321,772 + CA264_18580 0.43 -1.1
4,321,772 + CA264_18580 0.43 -0.9
4,321,773 - CA264_18580 0.43 -0.4
4,321,773 - CA264_18580 0.43 +0.0
4,321,802 + CA264_18580 0.46 +0.0
4,321,813 - CA264_18580 0.47 +0.3
4,321,840 + CA264_18580 0.50 -0.0
4,321,840 + CA264_18580 0.50 +1.2
4,321,841 - CA264_18580 0.50 -0.1
4,321,841 - CA264_18580 0.50 -1.1
4,321,841 - CA264_18580 0.50 +0.3
4,321,843 - CA264_18580 0.51 +1.6
4,321,861 + CA264_18580 0.53 -0.1
4,321,885 + CA264_18580 0.55 -0.8
4,321,885 + CA264_18580 0.55 -0.1
4,321,891 + CA264_18580 0.56 +0.0
4,321,962 - CA264_18580 0.64 +1.2
4,321,963 + CA264_18580 0.64 +0.1
4,321,970 - CA264_18580 0.65 +1.0
4,322,000 - CA264_18580 0.68 -0.3
4,322,000 - CA264_18580 0.68 -0.6
4,322,033 - CA264_18580 0.72 -0.1
4,322,033 - CA264_18580 0.72 -0.8
4,322,043 + CA264_18580 0.73 -0.5
4,322,062 + CA264_18580 0.75 +0.6
4,322,062 + CA264_18580 0.75 +0.6
4,322,063 - CA264_18580 0.75 -0.3
4,322,077 - CA264_18580 0.77 -1.1
4,322,112 + CA264_18580 0.80 -1.6
4,322,152 + CA264_18580 0.85 +2.2
4,322,169 - CA264_18580 0.87 -2.5
4,322,180 - CA264_18580 0.88 -0.0
4,322,191 + CA264_18580 0.89 -0.5
4,322,202 + -0.3
4,322,236 + +0.1
4,322,238 + +1.2
4,322,248 - +0.1
4,322,280 - -0.8
4,322,285 + -0.3
4,322,291 - -1.5
4,322,295 - -0.2
4,322,309 - -0.3
4,322,330 + -0.0
4,322,331 - -0.2
4,322,333 + -0.1
4,322,333 + -0.2
4,322,334 - -1.3
4,322,334 - -1.2
4,322,334 - -0.4
4,322,337 + -0.7
4,322,354 + -0.2
4,322,354 + -0.3
4,322,355 - +0.3
4,322,421 + CA264_18585 0.39 +0.2
4,322,426 + CA264_18585 0.41 -0.2
4,322,426 + CA264_18585 0.41 -1.0
4,322,431 + CA264_18585 0.43 +0.8
4,322,432 - CA264_18585 0.44 +1.8
4,322,432 - CA264_18585 0.44 +0.6
4,322,437 + CA264_18585 0.46 +0.5
4,322,442 + CA264_18585 0.48 -0.4
4,322,479 + CA264_18585 0.65 +2.2
4,322,480 - CA264_18585 0.66 +0.3
4,322,528 - CA264_18585 0.88 -0.4
4,322,531 + CA264_18585 0.89 -0.1
4,322,573 - -0.1
4,322,591 - +0.7
4,322,591 - -1.1
4,322,617 - -0.0
4,322,618 + -0.0
4,322,640 + +0.3
4,322,642 + -0.8
4,322,643 - -0.4
4,322,673 - +0.6
4,322,718 + CA264_18590 0.14 +0.7
4,322,723 + CA264_18590 0.15 +0.2
4,322,724 - CA264_18590 0.15 -0.3
4,322,764 + CA264_18590 0.26 -0.4
4,322,782 + CA264_18590 0.31 -0.2
4,322,782 + CA264_18590 0.31 +0.2
4,322,782 + CA264_18590 0.31 +0.1
4,322,783 - CA264_18590 0.31 +0.6
4,322,783 - CA264_18590 0.31 -0.8
4,322,783 - CA264_18590 0.31 +0.0
4,322,783 - CA264_18590 0.31 -0.4
4,322,786 + CA264_18590 0.32 +0.3
4,322,786 + CA264_18590 0.32 -1.1
4,322,787 - CA264_18590 0.33 -0.3
4,322,787 - CA264_18590 0.33 -0.5
4,322,797 + CA264_18590 0.35 +2.8
4,322,801 - CA264_18590 0.36 -1.4
4,322,857 + CA264_18590 0.51 +1.4
4,322,857 + CA264_18590 0.51 -0.4
4,322,857 + CA264_18590 0.51 +1.2
4,322,892 + CA264_18590 0.61 -0.9
4,322,904 + CA264_18590 0.64 +0.4
4,322,905 - CA264_18590 0.64 -2.4
4,322,907 - CA264_18590 0.65 -0.5
4,322,937 + CA264_18590 0.73 +0.6
4,322,938 - CA264_18590 0.73 +0.2
4,322,954 + CA264_18590 0.78 +0.2
4,322,954 + CA264_18590 0.78 +0.3
4,322,960 + CA264_18590 0.79 +0.2
4,323,018 - +0.3
4,323,041 - -0.2
4,323,079 - +0.9
4,323,092 + +0.3
4,323,119 - -0.2
4,323,172 + -0.4
4,323,241 + -0.2
4,323,241 + +0.4
4,323,242 - -0.1
4,323,245 - +0.2
4,323,248 + -0.8
4,323,258 + -0.1
4,323,286 - -0.3
4,323,295 + -0.5
4,323,295 + -1.8
4,323,296 - -0.8
4,323,328 - -1.1
4,323,330 - -1.0
4,323,342 - -0.4
4,323,359 - +0.1
4,323,363 - +1.2
4,323,364 + +0.4
4,323,364 + +1.2
4,323,365 - -0.4
4,323,427 + -0.8
4,323,427 + -0.3
4,323,444 + +0.2
4,323,444 + -0.4
4,323,444 + -0.6
4,323,491 + -0.4
4,323,491 + -0.6
4,323,491 + -0.7
4,323,492 - +1.2
4,323,492 - -0.7
4,323,506 - -0.1

Or see this region's nucleotide sequence