Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17890

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17880 and CA264_17885 are separated by 251 nucleotidesCA264_17885 and CA264_17890 are separated by 68 nucleotidesCA264_17890 and CA264_17895 are separated by 148 nucleotides CA264_17880: CA264_17880 - phosphatidylserine decarboxylase, at 4,157,596 to 4,158,279 _17880 CA264_17885: CA264_17885 - GAF domain-containing protein, at 4,158,531 to 4,159,013 _17885 CA264_17890: CA264_17890 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase, at 4,159,082 to 4,160,119 _17890 CA264_17895: CA264_17895 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 4,160,268 to 4,161,122 _17895 Position (kb) 4159 4160 4161Strain fitness (log2 ratio) -2 -1 0 1at 4158.277 kb on + strandat 4158.293 kb on - strandat 4158.293 kb on - strandat 4158.294 kb on + strandat 4158.294 kb on + strandat 4158.295 kb on - strandat 4158.300 kb on - strandat 4158.303 kb on + strandat 4158.303 kb on + strandat 4158.303 kb on + strandat 4158.304 kb on - strandat 4158.402 kb on - strandat 4158.499 kb on + strandat 4158.517 kb on - strandat 4158.520 kb on + strandat 4158.615 kb on + strand, within CA264_17885at 4158.633 kb on + strand, within CA264_17885at 4158.746 kb on + strand, within CA264_17885at 4158.965 kb on - strandat 4158.993 kb on + strandat 4158.993 kb on + strandat 4158.994 kb on - strandat 4159.018 kb on + strandat 4159.019 kb on - strandat 4159.021 kb on + strandat 4159.051 kb on + strandat 4159.056 kb on - strandat 4159.056 kb on - strandat 4159.090 kb on + strandat 4159.091 kb on - strandat 4159.091 kb on - strandat 4159.093 kb on + strandat 4159.093 kb on + strandat 4159.094 kb on - strandat 4159.094 kb on - strandat 4160.120 kb on - strandat 4160.145 kb on + strandat 4160.145 kb on + strandat 4160.213 kb on + strandat 4160.216 kb on + strandat 4160.224 kb on + strandat 4160.224 kb on + strandat 4160.844 kb on + strand, within CA264_17895

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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4,158,277 + +1.2
4,158,293 - -0.8
4,158,293 - -1.7
4,158,294 + -0.8
4,158,294 + -1.0
4,158,295 - +0.2
4,158,300 - -1.4
4,158,303 + -1.2
4,158,303 + +0.4
4,158,303 + -1.3
4,158,304 - -0.9
4,158,402 - -0.0
4,158,499 + +0.2
4,158,517 - +0.2
4,158,520 + +0.2
4,158,615 + CA264_17885 0.17 +1.2
4,158,633 + CA264_17885 0.21 -0.9
4,158,746 + CA264_17885 0.45 -0.8
4,158,965 - -0.2
4,158,993 + -0.2
4,158,993 + -0.6
4,158,994 - -0.9
4,159,018 + -1.1
4,159,019 - +0.1
4,159,021 + +0.4
4,159,051 + -1.3
4,159,056 - -0.8
4,159,056 - -2.1
4,159,090 + -0.4
4,159,091 - +1.2
4,159,091 - -0.2
4,159,093 + -0.0
4,159,093 + -0.6
4,159,094 - -0.2
4,159,094 - -1.0
4,160,120 - -0.9
4,160,145 + -1.0
4,160,145 + -0.8
4,160,213 + -0.6
4,160,216 + -0.8
4,160,224 + -0.8
4,160,224 + -1.1
4,160,844 + CA264_17895 0.67 -0.1

Or see this region's nucleotide sequence