Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16560

Experiment: m.b. Fusidic 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_16555 and CA264_16560 are separated by 110 nucleotides CA264_16555: CA264_16555 - cyanophycinase, at 3,849,294 to 3,850,106 _16555 CA264_16560: CA264_16560 - hypothetical protein, at 3,850,217 to 3,851,077 _16560 Position (kb) 3850 3851 3852Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3849.295 kb on + strandat 3849.411 kb on + strand, within CA264_16555at 3849.420 kb on + strand, within CA264_16555at 3849.421 kb on - strand, within CA264_16555at 3849.421 kb on - strand, within CA264_16555at 3849.440 kb on + strand, within CA264_16555at 3849.541 kb on + strand, within CA264_16555at 3849.606 kb on - strand, within CA264_16555at 3849.627 kb on - strand, within CA264_16555at 3849.692 kb on - strand, within CA264_16555at 3849.710 kb on + strand, within CA264_16555at 3849.713 kb on + strand, within CA264_16555at 3849.713 kb on + strand, within CA264_16555at 3849.903 kb on + strand, within CA264_16555at 3849.903 kb on + strand, within CA264_16555at 3849.903 kb on + strand, within CA264_16555at 3849.903 kb on + strand, within CA264_16555at 3849.903 kb on + strand, within CA264_16555at 3849.904 kb on - strand, within CA264_16555at 3849.904 kb on - strand, within CA264_16555at 3849.904 kb on - strand, within CA264_16555at 3849.904 kb on - strand, within CA264_16555at 3849.911 kb on + strand, within CA264_16555at 3849.916 kb on + strand, within CA264_16555at 3849.917 kb on - strand, within CA264_16555at 3849.956 kb on - strand, within CA264_16555at 3849.996 kb on + strand, within CA264_16555at 3849.996 kb on + strand, within CA264_16555at 3849.999 kb on - strand, within CA264_16555at 3850.081 kb on - strandat 3850.081 kb on - strandat 3850.122 kb on + strandat 3850.135 kb on + strandat 3850.138 kb on - strandat 3850.176 kb on - strandat 3850.432 kb on + strand, within CA264_16560at 3850.445 kb on - strand, within CA264_16560at 3850.469 kb on - strand, within CA264_16560at 3850.469 kb on - strand, within CA264_16560at 3850.500 kb on - strand, within CA264_16560at 3850.534 kb on - strand, within CA264_16560at 3850.780 kb on + strand, within CA264_16560at 3850.780 kb on + strand, within CA264_16560at 3850.783 kb on + strand, within CA264_16560at 3850.784 kb on - strand, within CA264_16560at 3850.785 kb on + strand, within CA264_16560at 3850.785 kb on + strand, within CA264_16560at 3850.785 kb on + strand, within CA264_16560at 3850.810 kb on + strand, within CA264_16560at 3850.812 kb on + strand, within CA264_16560at 3850.813 kb on - strand, within CA264_16560at 3850.881 kb on + strand, within CA264_16560at 3850.881 kb on + strand, within CA264_16560at 3850.882 kb on - strand, within CA264_16560at 3851.069 kb on + strandat 3851.083 kb on + strandat 3851.106 kb on + strandat 3851.107 kb on - strandat 3851.107 kb on - strandat 3851.197 kb on + strandat 3851.365 kb on + strandat 3851.406 kb on + strandat 3851.406 kb on + strandat 3851.408 kb on + strandat 3851.409 kb on - strandat 3851.409 kb on - strandat 3851.409 kb on - strandat 3851.409 kb on - strandat 3851.466 kb on - strandat 3851.554 kb on + strandat 3851.577 kb on + strandat 3851.578 kb on - strandat 3851.611 kb on - strandat 3851.648 kb on + strandat 3851.654 kb on + strandat 3851.746 kb on + strandat 3851.746 kb on + strandat 3851.747 kb on - strandat 3851.747 kb on - strandat 3851.908 kb on - strandat 3851.925 kb on + strandat 3851.925 kb on + strandat 3851.926 kb on - strandat 3851.973 kb on + strandat 3851.984 kb on - strandat 3851.985 kb on + strandat 3851.985 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
remove
3,849,295 + -0.6
3,849,411 + CA264_16555 0.14 +1.2
3,849,420 + CA264_16555 0.15 +0.3
3,849,421 - CA264_16555 0.16 -0.1
3,849,421 - CA264_16555 0.16 +0.2
3,849,440 + CA264_16555 0.18 +1.2
3,849,541 + CA264_16555 0.30 +0.1
3,849,606 - CA264_16555 0.38 +0.7
3,849,627 - CA264_16555 0.41 +0.3
3,849,692 - CA264_16555 0.49 +1.8
3,849,710 + CA264_16555 0.51 -0.1
3,849,713 + CA264_16555 0.52 -0.7
3,849,713 + CA264_16555 0.52 -0.2
3,849,903 + CA264_16555 0.75 -1.2
3,849,903 + CA264_16555 0.75 -0.6
3,849,903 + CA264_16555 0.75 -0.6
3,849,903 + CA264_16555 0.75 -1.6
3,849,903 + CA264_16555 0.75 -0.4
3,849,904 - CA264_16555 0.75 -0.5
3,849,904 - CA264_16555 0.75 -1.1
3,849,904 - CA264_16555 0.75 -1.0
3,849,904 - CA264_16555 0.75 -0.1
3,849,911 + CA264_16555 0.76 -0.1
3,849,916 + CA264_16555 0.77 -0.2
3,849,917 - CA264_16555 0.77 -0.8
3,849,956 - CA264_16555 0.81 -1.2
3,849,996 + CA264_16555 0.86 -0.5
3,849,996 + CA264_16555 0.86 -0.6
3,849,999 - CA264_16555 0.87 +0.4
3,850,081 - -0.2
3,850,081 - -0.5
3,850,122 + +1.6
3,850,135 + -0.4
3,850,138 - -1.5
3,850,176 - -0.1
3,850,432 + CA264_16560 0.25 +0.0
3,850,445 - CA264_16560 0.26 -0.6
3,850,469 - CA264_16560 0.29 -0.0
3,850,469 - CA264_16560 0.29 -0.0
3,850,500 - CA264_16560 0.33 -0.1
3,850,534 - CA264_16560 0.37 -0.6
3,850,780 + CA264_16560 0.65 -0.2
3,850,780 + CA264_16560 0.65 +0.3
3,850,783 + CA264_16560 0.66 -0.4
3,850,784 - CA264_16560 0.66 -0.3
3,850,785 + CA264_16560 0.66 +1.2
3,850,785 + CA264_16560 0.66 -0.5
3,850,785 + CA264_16560 0.66 -0.9
3,850,810 + CA264_16560 0.69 -0.6
3,850,812 + CA264_16560 0.69 -0.4
3,850,813 - CA264_16560 0.69 -0.1
3,850,881 + CA264_16560 0.77 -0.5
3,850,881 + CA264_16560 0.77 -0.8
3,850,882 - CA264_16560 0.77 -1.6
3,851,069 + -0.3
3,851,083 + +0.2
3,851,106 + +0.0
3,851,107 - -0.7
3,851,107 - +0.1
3,851,197 + +3.4
3,851,365 + -0.4
3,851,406 + -3.3
3,851,406 + +0.6
3,851,408 + +1.2
3,851,409 - -0.5
3,851,409 - -0.2
3,851,409 - -1.3
3,851,409 - -0.3
3,851,466 - -0.7
3,851,554 + -2.1
3,851,577 + -0.3
3,851,578 - +1.0
3,851,611 - -0.0
3,851,648 + +0.1
3,851,654 + -0.6
3,851,746 + -0.2
3,851,746 + +0.6
3,851,747 - -0.1
3,851,747 - -2.2
3,851,908 - +1.2
3,851,925 + +0.6
3,851,925 + -0.4
3,851,926 - +1.6
3,851,973 + -0.5
3,851,984 - +0.4
3,851,985 + -2.0
3,851,985 + +0.2

Or see this region's nucleotide sequence