Experiment: m.b. Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15715 and CA264_15720 are separated by 201 nucleotides CA264_15720 and CA264_15725 are separated by 45 nucleotides CA264_15725 and CA264_15730 are separated by 90 nucleotides
CA264_15715: CA264_15715 - GTPase HflX, at 3,668,209 to 3,669,396
_15715
CA264_15720: CA264_15720 - phosphohistidine phosphatase, at 3,669,598 to 3,670,092
_15720
CA264_15725: CA264_15725 - polyphosphate kinase 1, at 3,670,138 to 3,672,252
_15725
CA264_15730: CA264_15730 - hypothetical protein, at 3,672,343 to 3,673,368
_15730
Position (kb)
3670
3671
3672
3673 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3669.138 kb on + strand, within CA264_15715 at 3669.179 kb on + strand, within CA264_15715 at 3669.265 kb on + strand, within CA264_15715 at 3669.266 kb on - strand, within CA264_15715 at 3669.267 kb on + strand, within CA264_15715 at 3669.298 kb on - strand at 3669.298 kb on - strand at 3669.395 kb on - strand at 3669.507 kb on + strand at 3669.539 kb on - strand at 3669.539 kb on - strand at 3669.588 kb on + strand at 3669.610 kb on + strand at 3669.611 kb on - strand at 3669.617 kb on + strand at 3669.618 kb on - strand at 3669.811 kb on + strand, within CA264_15720 at 3669.903 kb on - strand, within CA264_15720 at 3670.031 kb on - strand, within CA264_15720 at 3670.031 kb on - strand, within CA264_15720 at 3670.067 kb on - strand at 3670.131 kb on + strand at 3670.164 kb on + strand at 3670.164 kb on + strand at 3670.165 kb on - strand at 3670.216 kb on + strand at 3670.216 kb on + strand at 3670.218 kb on + strand at 3670.218 kb on + strand at 3670.218 kb on + strand at 3670.219 kb on - strand at 3670.224 kb on - strand at 3670.224 kb on - strand at 3670.546 kb on + strand, within CA264_15725 at 3670.546 kb on + strand, within CA264_15725 at 3670.546 kb on + strand, within CA264_15725 at 3670.547 kb on - strand, within CA264_15725 at 3670.733 kb on + strand, within CA264_15725 at 3670.819 kb on + strand, within CA264_15725 at 3670.819 kb on + strand, within CA264_15725 at 3670.820 kb on - strand, within CA264_15725 at 3670.824 kb on + strand, within CA264_15725 at 3670.825 kb on - strand, within CA264_15725 at 3670.825 kb on - strand, within CA264_15725 at 3670.825 kb on - strand, within CA264_15725 at 3671.104 kb on + strand, within CA264_15725 at 3671.106 kb on + strand, within CA264_15725 at 3671.182 kb on + strand, within CA264_15725 at 3671.182 kb on + strand, within CA264_15725 at 3671.216 kb on - strand, within CA264_15725 at 3671.331 kb on + strand, within CA264_15725 at 3671.399 kb on - strand, within CA264_15725 at 3671.436 kb on - strand, within CA264_15725 at 3671.448 kb on - strand, within CA264_15725 at 3671.562 kb on - strand, within CA264_15725 at 3671.583 kb on + strand, within CA264_15725 at 3671.715 kb on - strand, within CA264_15725 at 3671.726 kb on + strand, within CA264_15725 at 3671.809 kb on + strand, within CA264_15725 at 3671.810 kb on - strand, within CA264_15725 at 3671.900 kb on + strand, within CA264_15725 at 3671.901 kb on - strand, within CA264_15725 at 3671.901 kb on - strand, within CA264_15725 at 3671.901 kb on - strand, within CA264_15725 at 3672.046 kb on + strand at 3672.154 kb on - strand at 3672.173 kb on - strand at 3672.173 kb on - strand at 3672.187 kb on + strand at 3672.250 kb on + strand at 3672.255 kb on + strand at 3672.255 kb on + strand at 3672.296 kb on - strand at 3672.301 kb on - strand at 3672.304 kb on + strand at 3672.304 kb on + strand at 3672.305 kb on - strand at 3672.305 kb on - strand at 3672.383 kb on + strand at 3672.384 kb on - strand at 3672.397 kb on + strand at 3672.398 kb on - strand at 3672.402 kb on - strand at 3672.431 kb on - strand at 3672.431 kb on - strand at 3672.476 kb on + strand, within CA264_15730 at 3672.477 kb on - strand, within CA264_15730 at 3672.477 kb on - strand, within CA264_15730 at 3672.585 kb on + strand, within CA264_15730 at 3672.617 kb on + strand, within CA264_15730 at 3672.617 kb on + strand, within CA264_15730 at 3672.617 kb on + strand, within CA264_15730 at 3672.774 kb on - strand, within CA264_15730 at 3672.778 kb on - strand, within CA264_15730 at 3672.809 kb on + strand, within CA264_15730 at 3672.809 kb on + strand, within CA264_15730 at 3672.873 kb on + strand, within CA264_15730 at 3673.007 kb on + strand, within CA264_15730 at 3673.060 kb on - strand, within CA264_15730 at 3673.061 kb on + strand, within CA264_15730 at 3673.061 kb on + strand, within CA264_15730 at 3673.062 kb on - strand, within CA264_15730 at 3673.131 kb on + strand, within CA264_15730 at 3673.132 kb on - strand, within CA264_15730 at 3673.134 kb on + strand, within CA264_15730 at 3673.134 kb on + strand, within CA264_15730 at 3673.135 kb on - strand, within CA264_15730 at 3673.135 kb on - strand, within CA264_15730
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml remove 3,669,138 + CA264_15715 0.78 -0.4 3,669,179 + CA264_15715 0.82 -1.5 3,669,265 + CA264_15715 0.89 -0.4 3,669,266 - CA264_15715 0.89 -0.7 3,669,267 + CA264_15715 0.89 -0.4 3,669,298 - +1.2 3,669,298 - +0.3 3,669,395 - +0.1 3,669,507 + -0.1 3,669,539 - +0.4 3,669,539 - -2.0 3,669,588 + +2.0 3,669,610 + +0.3 3,669,611 - -0.8 3,669,617 + +0.2 3,669,618 - +0.3 3,669,811 + CA264_15720 0.43 -1.1 3,669,903 - CA264_15720 0.62 -0.2 3,670,031 - CA264_15720 0.87 -0.6 3,670,031 - CA264_15720 0.87 +0.6 3,670,067 - -0.4 3,670,131 + -0.2 3,670,164 + +0.7 3,670,164 + +0.1 3,670,165 - -0.3 3,670,216 + +0.3 3,670,216 + -0.4 3,670,218 + -0.5 3,670,218 + -0.3 3,670,218 + -0.3 3,670,219 - -1.1 3,670,224 - -0.1 3,670,224 - -1.1 3,670,546 + CA264_15725 0.19 -0.1 3,670,546 + CA264_15725 0.19 +0.2 3,670,546 + CA264_15725 0.19 -0.4 3,670,547 - CA264_15725 0.19 +0.4 3,670,733 + CA264_15725 0.28 -1.1 3,670,819 + CA264_15725 0.32 +0.5 3,670,819 + CA264_15725 0.32 -0.1 3,670,820 - CA264_15725 0.32 -0.4 3,670,824 + CA264_15725 0.32 +0.2 3,670,825 - CA264_15725 0.32 -0.5 3,670,825 - CA264_15725 0.32 +0.0 3,670,825 - CA264_15725 0.32 -0.6 3,671,104 + CA264_15725 0.46 -1.1 3,671,106 + CA264_15725 0.46 -0.4 3,671,182 + CA264_15725 0.49 +0.5 3,671,182 + CA264_15725 0.49 +0.5 3,671,216 - CA264_15725 0.51 +1.6 3,671,331 + CA264_15725 0.56 +0.5 3,671,399 - CA264_15725 0.60 +2.5 3,671,436 - CA264_15725 0.61 +1.2 3,671,448 - CA264_15725 0.62 -0.3 3,671,562 - CA264_15725 0.67 -0.3 3,671,583 + CA264_15725 0.68 -0.7 3,671,715 - CA264_15725 0.75 -0.1 3,671,726 + CA264_15725 0.75 -0.4 3,671,809 + CA264_15725 0.79 -0.5 3,671,810 - CA264_15725 0.79 -0.9 3,671,900 + CA264_15725 0.83 +0.0 3,671,901 - CA264_15725 0.83 -0.2 3,671,901 - CA264_15725 0.83 -0.6 3,671,901 - CA264_15725 0.83 -1.4 3,672,046 + +0.6 3,672,154 - -0.7 3,672,173 - +1.2 3,672,173 - +0.2 3,672,187 + +0.7 3,672,250 + -0.4 3,672,255 + -0.2 3,672,255 + +0.3 3,672,296 - -1.0 3,672,301 - -0.3 3,672,304 + -0.6 3,672,304 + +0.4 3,672,305 - +0.5 3,672,305 - -0.4 3,672,383 + -1.3 3,672,384 - +1.2 3,672,397 + +0.7 3,672,398 - +0.0 3,672,402 - -1.1 3,672,431 - +1.2 3,672,431 - -0.4 3,672,476 + CA264_15730 0.13 -1.1 3,672,477 - CA264_15730 0.13 -0.3 3,672,477 - CA264_15730 0.13 -0.0 3,672,585 + CA264_15730 0.24 +1.4 3,672,617 + CA264_15730 0.27 -0.1 3,672,617 + CA264_15730 0.27 -0.5 3,672,617 + CA264_15730 0.27 -0.6 3,672,774 - CA264_15730 0.42 +1.6 3,672,778 - CA264_15730 0.42 -1.4 3,672,809 + CA264_15730 0.45 +0.9 3,672,809 + CA264_15730 0.45 +3.2 3,672,873 + CA264_15730 0.52 +2.2 3,673,007 + CA264_15730 0.65 +0.6 3,673,060 - CA264_15730 0.70 -0.3 3,673,061 + CA264_15730 0.70 -0.5 3,673,061 + CA264_15730 0.70 -2.0 3,673,062 - CA264_15730 0.70 +0.2 3,673,131 + CA264_15730 0.77 +0.3 3,673,132 - CA264_15730 0.77 -1.3 3,673,134 + CA264_15730 0.77 +0.2 3,673,134 + CA264_15730 0.77 -2.6 3,673,135 - CA264_15730 0.77 -0.1 3,673,135 - CA264_15730 0.77 -0.2
Or see this region's nucleotide sequence