Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14585

Experiment: m.b. Fusidic 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_14575 and CA264_14580 are separated by 349 nucleotidesCA264_14580 and CA264_14585 are separated by 98 nucleotidesCA264_14585 and CA264_14590 are separated by 131 nucleotides CA264_14575: CA264_14575 - protease, at 3,426,997 to 3,427,800 _14575 CA264_14580: CA264_14580 - hypothetical protein, at 3,428,150 to 3,428,389 _14580 CA264_14585: CA264_14585 - YicC family protein, at 3,428,488 to 3,429,369 _14585 CA264_14590: CA264_14590 - phosphoribosylformylglycinamidine synthase I, at 3,429,501 to 3,430,193 _14590 Position (kb) 3428 3429 3430Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3427.506 kb on + strand, within CA264_14575at 3427.516 kb on + strand, within CA264_14575at 3427.552 kb on + strand, within CA264_14575at 3427.605 kb on + strand, within CA264_14575at 3427.605 kb on + strand, within CA264_14575at 3427.605 kb on + strand, within CA264_14575at 3427.606 kb on - strand, within CA264_14575at 3427.638 kb on + strand, within CA264_14575at 3427.659 kb on + strand, within CA264_14575at 3427.826 kb on + strandat 3427.827 kb on - strandat 3427.827 kb on - strandat 3427.827 kb on - strandat 3427.841 kb on + strandat 3427.842 kb on - strandat 3427.843 kb on + strandat 3427.862 kb on + strandat 3427.862 kb on + strandat 3427.862 kb on + strandat 3427.863 kb on - strandat 3427.863 kb on - strandat 3427.868 kb on + strandat 3427.869 kb on - strandat 3427.869 kb on - strandat 3427.987 kb on - strandat 3428.051 kb on + strandat 3428.145 kb on - strandat 3428.187 kb on + strand, within CA264_14580at 3428.187 kb on + strand, within CA264_14580at 3428.188 kb on - strand, within CA264_14580at 3428.282 kb on - strand, within CA264_14580at 3428.393 kb on + strandat 3428.416 kb on + strandat 3428.417 kb on - strandat 3428.473 kb on - strandat 3428.480 kb on - strandat 3428.483 kb on + strandat 3428.484 kb on - strandat 3428.489 kb on + strandat 3428.490 kb on - strandat 3428.515 kb on + strandat 3428.620 kb on - strand, within CA264_14585at 3428.654 kb on + strand, within CA264_14585at 3428.673 kb on - strand, within CA264_14585at 3428.728 kb on - strand, within CA264_14585at 3428.729 kb on + strand, within CA264_14585at 3428.730 kb on - strand, within CA264_14585at 3428.730 kb on - strand, within CA264_14585at 3428.730 kb on - strand, within CA264_14585at 3428.732 kb on + strand, within CA264_14585at 3428.732 kb on + strand, within CA264_14585at 3428.733 kb on - strand, within CA264_14585at 3428.733 kb on - strand, within CA264_14585at 3429.102 kb on + strand, within CA264_14585at 3429.103 kb on - strand, within CA264_14585at 3429.103 kb on - strand, within CA264_14585at 3429.104 kb on + strand, within CA264_14585at 3429.105 kb on - strand, within CA264_14585at 3429.105 kb on - strand, within CA264_14585at 3429.105 kb on - strand, within CA264_14585at 3429.108 kb on - strand, within CA264_14585at 3429.108 kb on - strand, within CA264_14585at 3429.108 kb on - strand, within CA264_14585at 3429.130 kb on + strand, within CA264_14585at 3429.230 kb on + strand, within CA264_14585at 3429.231 kb on - strand, within CA264_14585at 3429.258 kb on + strand, within CA264_14585at 3429.369 kb on + strandat 3429.370 kb on - strandat 3429.370 kb on - strandat 3429.466 kb on - strandat 3429.469 kb on + strandat 3429.481 kb on - strandat 3429.486 kb on - strandat 3429.514 kb on + strandat 3429.563 kb on + strandat 3429.617 kb on - strand, within CA264_14590at 3429.632 kb on + strand, within CA264_14590at 3429.634 kb on + strand, within CA264_14590at 3429.635 kb on - strand, within CA264_14590at 3429.666 kb on + strand, within CA264_14590at 3429.667 kb on - strand, within CA264_14590at 3429.701 kb on + strand, within CA264_14590at 3429.701 kb on + strand, within CA264_14590at 3429.702 kb on - strand, within CA264_14590at 3429.704 kb on + strand, within CA264_14590at 3429.704 kb on + strand, within CA264_14590at 3429.704 kb on + strand, within CA264_14590at 3429.846 kb on + strand, within CA264_14590at 3429.846 kb on + strand, within CA264_14590at 3429.846 kb on + strand, within CA264_14590at 3429.847 kb on - strand, within CA264_14590at 3429.847 kb on - strand, within CA264_14590at 3429.906 kb on + strand, within CA264_14590at 3429.906 kb on + strand, within CA264_14590at 3430.000 kb on - strand, within CA264_14590at 3430.170 kb on - strandat 3430.181 kb on - strandat 3430.201 kb on + strandat 3430.220 kb on + strandat 3430.248 kb on - strandat 3430.289 kb on + strandat 3430.290 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
remove
3,427,506 + CA264_14575 0.63 +1.1
3,427,516 + CA264_14575 0.65 -0.3
3,427,552 + CA264_14575 0.69 -0.3
3,427,605 + CA264_14575 0.76 -0.3
3,427,605 + CA264_14575 0.76 -0.0
3,427,605 + CA264_14575 0.76 +0.9
3,427,606 - CA264_14575 0.76 +0.1
3,427,638 + CA264_14575 0.80 -0.2
3,427,659 + CA264_14575 0.82 -1.2
3,427,826 + +0.1
3,427,827 - -0.8
3,427,827 - -0.4
3,427,827 - -0.6
3,427,841 + +0.7
3,427,842 - -0.5
3,427,843 + -0.5
3,427,862 + +1.1
3,427,862 + -0.9
3,427,862 + +0.3
3,427,863 - +0.1
3,427,863 - -0.7
3,427,868 + -0.3
3,427,869 - -0.8
3,427,869 - -0.1
3,427,987 - -0.1
3,428,051 + -0.4
3,428,145 - +0.1
3,428,187 + CA264_14580 0.15 +1.7
3,428,187 + CA264_14580 0.15 -0.3
3,428,188 - CA264_14580 0.16 +0.1
3,428,282 - CA264_14580 0.55 -0.6
3,428,393 + -0.8
3,428,416 + -0.7
3,428,417 - +0.0
3,428,473 - -0.3
3,428,480 - -0.8
3,428,483 + -0.5
3,428,484 - -0.3
3,428,489 + +1.1
3,428,490 - -0.5
3,428,515 + -0.2
3,428,620 - CA264_14585 0.15 +0.2
3,428,654 + CA264_14585 0.19 -0.6
3,428,673 - CA264_14585 0.21 +0.1
3,428,728 - CA264_14585 0.27 -0.1
3,428,729 + CA264_14585 0.27 -1.0
3,428,730 - CA264_14585 0.27 -1.1
3,428,730 - CA264_14585 0.27 +0.2
3,428,730 - CA264_14585 0.27 -0.2
3,428,732 + CA264_14585 0.28 -1.1
3,428,732 + CA264_14585 0.28 -0.2
3,428,733 - CA264_14585 0.28 -0.6
3,428,733 - CA264_14585 0.28 -0.9
3,429,102 + CA264_14585 0.70 -0.5
3,429,103 - CA264_14585 0.70 -0.4
3,429,103 - CA264_14585 0.70 -0.2
3,429,104 + CA264_14585 0.70 +0.3
3,429,105 - CA264_14585 0.70 -0.1
3,429,105 - CA264_14585 0.70 +0.4
3,429,105 - CA264_14585 0.70 +0.1
3,429,108 - CA264_14585 0.70 -1.2
3,429,108 - CA264_14585 0.70 -1.1
3,429,108 - CA264_14585 0.70 +0.0
3,429,130 + CA264_14585 0.73 -0.7
3,429,230 + CA264_14585 0.84 -0.4
3,429,231 - CA264_14585 0.84 +0.1
3,429,258 + CA264_14585 0.87 -0.0
3,429,369 + +0.9
3,429,370 - +0.5
3,429,370 - -0.3
3,429,466 - -0.0
3,429,469 + +0.1
3,429,481 - +0.0
3,429,486 - -0.0
3,429,514 + +1.7
3,429,563 + -0.7
3,429,617 - CA264_14590 0.17 -0.4
3,429,632 + CA264_14590 0.19 +0.5
3,429,634 + CA264_14590 0.19 -1.7
3,429,635 - CA264_14590 0.19 -0.5
3,429,666 + CA264_14590 0.24 +0.8
3,429,667 - CA264_14590 0.24 -0.7
3,429,701 + CA264_14590 0.29 +2.4
3,429,701 + CA264_14590 0.29 -1.2
3,429,702 - CA264_14590 0.29 -0.9
3,429,704 + CA264_14590 0.29 -1.5
3,429,704 + CA264_14590 0.29 +0.8
3,429,704 + CA264_14590 0.29 -2.9
3,429,846 + CA264_14590 0.50 +0.1
3,429,846 + CA264_14590 0.50 +0.1
3,429,846 + CA264_14590 0.50 +0.4
3,429,847 - CA264_14590 0.50 -0.9
3,429,847 - CA264_14590 0.50 +0.1
3,429,906 + CA264_14590 0.58 +0.1
3,429,906 + CA264_14590 0.58 -0.6
3,430,000 - CA264_14590 0.72 -0.1
3,430,170 - +1.8
3,430,181 - -1.8
3,430,201 + +0.1
3,430,220 + -0.7
3,430,248 - -0.6
3,430,289 + -0.3
3,430,290 - -0.5

Or see this region's nucleotide sequence