Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13885

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13875 and CA264_13880 are separated by 71 nucleotidesCA264_13880 and CA264_13885 are separated by 241 nucleotidesCA264_13885 and CA264_13890 are separated by 24 nucleotides CA264_13875: CA264_13875 - hypothetical protein, at 3,239,277 to 3,240,101 _13875 CA264_13880: CA264_13880 - hypothetical protein, at 3,240,173 to 3,240,424 _13880 CA264_13885: CA264_13885 - DsbA family protein, at 3,240,666 to 3,241,460 _13885 CA264_13890: CA264_13890 - manganese catalase, at 3,241,485 to 3,242,429 _13890 Position (kb) 3240 3241 3242Strain fitness (log2 ratio) -2 -1 0 1 2at 3239.701 kb on + strand, within CA264_13875at 3239.701 kb on + strand, within CA264_13875at 3239.820 kb on + strand, within CA264_13875at 3239.821 kb on - strand, within CA264_13875at 3240.010 kb on - strand, within CA264_13875at 3240.080 kb on + strandat 3240.089 kb on + strandat 3240.090 kb on - strandat 3240.100 kb on - strandat 3240.111 kb on + strandat 3240.111 kb on + strandat 3240.112 kb on - strandat 3240.112 kb on - strandat 3240.112 kb on - strandat 3240.115 kb on + strandat 3240.115 kb on + strandat 3240.116 kb on - strandat 3240.117 kb on + strandat 3240.122 kb on - strandat 3240.122 kb on - strandat 3240.122 kb on - strandat 3240.259 kb on + strand, within CA264_13880at 3240.260 kb on - strand, within CA264_13880at 3240.269 kb on + strand, within CA264_13880at 3240.269 kb on + strand, within CA264_13880at 3240.284 kb on + strand, within CA264_13880at 3240.287 kb on + strand, within CA264_13880at 3240.287 kb on + strand, within CA264_13880at 3240.288 kb on - strand, within CA264_13880at 3240.288 kb on - strand, within CA264_13880at 3240.317 kb on + strand, within CA264_13880at 3240.317 kb on + strand, within CA264_13880at 3240.318 kb on - strand, within CA264_13880at 3240.383 kb on + strand, within CA264_13880at 3240.410 kb on - strandat 3240.523 kb on + strandat 3240.524 kb on - strandat 3240.525 kb on + strandat 3240.570 kb on - strandat 3240.605 kb on + strandat 3240.605 kb on + strandat 3240.609 kb on + strandat 3240.610 kb on - strandat 3240.610 kb on - strandat 3240.642 kb on + strandat 3240.642 kb on + strandat 3240.642 kb on + strandat 3240.655 kb on + strandat 3240.733 kb on + strandat 3240.733 kb on + strandat 3240.734 kb on - strandat 3240.734 kb on - strandat 3240.768 kb on + strand, within CA264_13885at 3240.769 kb on - strand, within CA264_13885at 3241.084 kb on + strand, within CA264_13885at 3241.133 kb on + strand, within CA264_13885at 3241.169 kb on - strand, within CA264_13885at 3241.202 kb on + strand, within CA264_13885at 3241.205 kb on - strand, within CA264_13885at 3241.210 kb on - strand, within CA264_13885at 3241.306 kb on + strand, within CA264_13885at 3241.468 kb on + strandat 3241.468 kb on + strandat 3241.469 kb on - strandat 3241.611 kb on - strand, within CA264_13890at 3241.676 kb on + strand, within CA264_13890at 3241.677 kb on - strand, within CA264_13890at 3241.677 kb on - strand, within CA264_13890at 3241.677 kb on - strand, within CA264_13890at 3241.678 kb on + strand, within CA264_13890at 3241.679 kb on - strand, within CA264_13890at 3241.679 kb on - strand, within CA264_13890at 3241.759 kb on + strand, within CA264_13890at 3241.760 kb on - strand, within CA264_13890at 3241.771 kb on + strand, within CA264_13890at 3241.816 kb on - strand, within CA264_13890at 3241.877 kb on + strand, within CA264_13890at 3241.877 kb on + strand, within CA264_13890at 3241.877 kb on + strand, within CA264_13890at 3241.878 kb on - strand, within CA264_13890at 3241.894 kb on + strand, within CA264_13890at 3241.894 kb on + strand, within CA264_13890at 3241.895 kb on - strand, within CA264_13890at 3241.927 kb on + strand, within CA264_13890at 3241.928 kb on - strand, within CA264_13890at 3242.003 kb on - strand, within CA264_13890at 3242.003 kb on - strand, within CA264_13890at 3242.003 kb on - strand, within CA264_13890at 3242.006 kb on + strand, within CA264_13890at 3242.196 kb on + strand, within CA264_13890at 3242.261 kb on - strand, within CA264_13890at 3242.261 kb on - strand, within CA264_13890at 3242.261 kb on - strand, within CA264_13890at 3242.312 kb on + strand, within CA264_13890at 3242.312 kb on + strand, within CA264_13890at 3242.313 kb on - strand, within CA264_13890at 3242.313 kb on - strand, within CA264_13890at 3242.406 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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3,239,701 + CA264_13875 0.51 -0.4
3,239,701 + CA264_13875 0.51 +0.1
3,239,820 + CA264_13875 0.66 -1.0
3,239,821 - CA264_13875 0.66 -1.1
3,240,010 - CA264_13875 0.89 -0.6
3,240,080 + +0.1
3,240,089 + -0.9
3,240,090 - +0.7
3,240,100 - -1.3
3,240,111 + -0.8
3,240,111 + -0.1
3,240,112 - +0.8
3,240,112 - -0.2
3,240,112 - -0.4
3,240,115 + -0.3
3,240,115 + -0.3
3,240,116 - -0.8
3,240,117 + +0.1
3,240,122 - -1.3
3,240,122 - -0.5
3,240,122 - -0.2
3,240,259 + CA264_13880 0.34 -0.5
3,240,260 - CA264_13880 0.35 -0.2
3,240,269 + CA264_13880 0.38 -0.5
3,240,269 + CA264_13880 0.38 -0.5
3,240,284 + CA264_13880 0.44 +0.1
3,240,287 + CA264_13880 0.45 +0.7
3,240,287 + CA264_13880 0.45 +0.3
3,240,288 - CA264_13880 0.46 -1.2
3,240,288 - CA264_13880 0.46 +0.5
3,240,317 + CA264_13880 0.57 +0.5
3,240,317 + CA264_13880 0.57 -2.4
3,240,318 - CA264_13880 0.58 +0.9
3,240,383 + CA264_13880 0.83 +1.1
3,240,410 - +1.7
3,240,523 + -0.5
3,240,524 - -0.0
3,240,525 + -0.9
3,240,570 - -1.2
3,240,605 + -1.0
3,240,605 + +1.1
3,240,609 + -1.9
3,240,610 - -1.4
3,240,610 - +0.0
3,240,642 + +0.4
3,240,642 + +0.2
3,240,642 + -0.6
3,240,655 + -0.2
3,240,733 + -0.1
3,240,733 + -0.1
3,240,734 - +1.1
3,240,734 - -0.3
3,240,768 + CA264_13885 0.13 +0.8
3,240,769 - CA264_13885 0.13 -0.7
3,241,084 + CA264_13885 0.53 -1.1
3,241,133 + CA264_13885 0.59 -0.2
3,241,169 - CA264_13885 0.63 -0.4
3,241,202 + CA264_13885 0.67 +0.8
3,241,205 - CA264_13885 0.68 +0.4
3,241,210 - CA264_13885 0.68 -0.7
3,241,306 + CA264_13885 0.81 -1.1
3,241,468 + -0.4
3,241,468 + -0.4
3,241,469 - +0.1
3,241,611 - CA264_13890 0.13 +0.6
3,241,676 + CA264_13890 0.20 -0.3
3,241,677 - CA264_13890 0.20 +1.7
3,241,677 - CA264_13890 0.20 -0.2
3,241,677 - CA264_13890 0.20 -0.0
3,241,678 + CA264_13890 0.20 +0.5
3,241,679 - CA264_13890 0.21 +1.1
3,241,679 - CA264_13890 0.21 -0.9
3,241,759 + CA264_13890 0.29 -0.7
3,241,760 - CA264_13890 0.29 +0.8
3,241,771 + CA264_13890 0.30 +0.4
3,241,816 - CA264_13890 0.35 +0.4
3,241,877 + CA264_13890 0.41 -0.6
3,241,877 + CA264_13890 0.41 -0.1
3,241,877 + CA264_13890 0.41 -0.1
3,241,878 - CA264_13890 0.42 -0.4
3,241,894 + CA264_13890 0.43 +0.2
3,241,894 + CA264_13890 0.43 -0.3
3,241,895 - CA264_13890 0.43 -0.5
3,241,927 + CA264_13890 0.47 +0.1
3,241,928 - CA264_13890 0.47 -0.3
3,242,003 - CA264_13890 0.55 -0.3
3,242,003 - CA264_13890 0.55 -0.4
3,242,003 - CA264_13890 0.55 -0.1
3,242,006 + CA264_13890 0.55 -1.1
3,242,196 + CA264_13890 0.75 +0.7
3,242,261 - CA264_13890 0.82 +1.8
3,242,261 - CA264_13890 0.82 -1.6
3,242,261 - CA264_13890 0.82 +0.5
3,242,312 + CA264_13890 0.88 +0.8
3,242,312 + CA264_13890 0.88 -1.2
3,242,313 - CA264_13890 0.88 -0.5
3,242,313 - CA264_13890 0.88 +0.0
3,242,406 + -0.4

Or see this region's nucleotide sequence