Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11930

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11920 and CA264_11925 are separated by 88 nucleotidesCA264_11925 and CA264_11930 are separated by 14 nucleotidesCA264_11930 and CA264_11935 are separated by 369 nucleotides CA264_11920: CA264_11920 - DNA polymerase III subunit epsilon, at 2,771,554 to 2,772,360 _11920 CA264_11925: CA264_11925 - hypothetical protein, at 2,772,449 to 2,773,078 _11925 CA264_11930: CA264_11930 - peptidase M48, at 2,773,093 to 2,773,890 _11930 CA264_11935: CA264_11935 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 2,774,260 to 2,774,871 _11935 Position (kb) 2773 2774Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2772.103 kb on - strand, within CA264_11920at 2772.126 kb on + strand, within CA264_11920at 2772.126 kb on + strand, within CA264_11920at 2772.126 kb on + strand, within CA264_11920at 2772.126 kb on + strand, within CA264_11920at 2772.188 kb on - strand, within CA264_11920at 2772.189 kb on + strand, within CA264_11920at 2772.193 kb on - strand, within CA264_11920at 2772.227 kb on - strand, within CA264_11920at 2772.229 kb on - strand, within CA264_11920at 2772.271 kb on + strand, within CA264_11920at 2772.308 kb on - strandat 2772.400 kb on + strandat 2772.400 kb on + strandat 2772.428 kb on + strandat 2772.428 kb on + strandat 2772.428 kb on + strandat 2772.437 kb on + strandat 2772.438 kb on - strandat 2772.601 kb on + strand, within CA264_11925at 2772.866 kb on - strand, within CA264_11925at 2772.866 kb on - strand, within CA264_11925at 2772.866 kb on - strand, within CA264_11925at 2772.867 kb on + strand, within CA264_11925at 2772.867 kb on + strand, within CA264_11925at 2772.867 kb on + strand, within CA264_11925at 2773.017 kb on + strandat 2773.017 kb on + strandat 2773.036 kb on + strandat 2773.094 kb on + strandat 2773.106 kb on + strandat 2773.107 kb on - strandat 2773.107 kb on - strandat 2773.107 kb on - strandat 2773.321 kb on + strand, within CA264_11930at 2773.543 kb on - strand, within CA264_11930at 2773.543 kb on - strand, within CA264_11930at 2773.544 kb on + strand, within CA264_11930at 2773.545 kb on - strand, within CA264_11930at 2773.547 kb on - strand, within CA264_11930at 2773.547 kb on - strand, within CA264_11930at 2773.557 kb on + strand, within CA264_11930at 2773.659 kb on - strand, within CA264_11930at 2773.867 kb on - strandat 2773.886 kb on + strandat 2773.887 kb on - strandat 2773.887 kb on - strandat 2773.962 kb on + strandat 2773.962 kb on + strandat 2773.963 kb on - strandat 2773.964 kb on + strandat 2773.973 kb on - strandat 2773.977 kb on + strandat 2773.982 kb on + strandat 2773.986 kb on + strandat 2773.986 kb on + strandat 2773.987 kb on - strandat 2773.991 kb on - strandat 2773.991 kb on - strandat 2773.991 kb on - strandat 2773.994 kb on + strandat 2773.994 kb on + strandat 2773.994 kb on + strandat 2773.995 kb on - strandat 2773.995 kb on - strandat 2774.005 kb on + strandat 2774.005 kb on + strandat 2774.005 kb on + strandat 2774.006 kb on - strandat 2774.063 kb on + strandat 2774.079 kb on + strandat 2774.088 kb on - strandat 2774.088 kb on - strandat 2774.108 kb on + strandat 2774.108 kb on + strandat 2774.109 kb on - strandat 2774.109 kb on - strandat 2774.109 kb on - strandat 2774.114 kb on + strandat 2774.229 kb on - strandat 2774.287 kb on + strandat 2774.310 kb on + strandat 2774.311 kb on - strandat 2774.311 kb on - strandat 2774.708 kb on - strand, within CA264_11935at 2774.708 kb on - strand, within CA264_11935at 2774.721 kb on + strand, within CA264_11935at 2774.731 kb on + strand, within CA264_11935at 2774.773 kb on + strand, within CA264_11935at 2774.806 kb on - strand, within CA264_11935at 2774.811 kb on - strandat 2774.830 kb on + strandat 2774.830 kb on + strandat 2774.830 kb on + strandat 2774.831 kb on - strandat 2774.831 kb on - strandat 2774.869 kb on + strandat 2774.869 kb on + strandat 2774.869 kb on + strandat 2774.869 kb on + strandat 2774.880 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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2,772,103 - CA264_11920 0.68 +0.1
2,772,126 + CA264_11920 0.71 +0.0
2,772,126 + CA264_11920 0.71 -1.6
2,772,126 + CA264_11920 0.71 -1.2
2,772,126 + CA264_11920 0.71 +0.0
2,772,188 - CA264_11920 0.79 -0.5
2,772,189 + CA264_11920 0.79 +0.0
2,772,193 - CA264_11920 0.79 -1.0
2,772,227 - CA264_11920 0.83 -1.0
2,772,229 - CA264_11920 0.84 +0.5
2,772,271 + CA264_11920 0.89 +0.0
2,772,308 - -0.2
2,772,400 + -0.6
2,772,400 + -0.5
2,772,428 + +0.7
2,772,428 + -0.8
2,772,428 + -0.8
2,772,437 + +0.0
2,772,438 - -0.1
2,772,601 + CA264_11925 0.24 +0.4
2,772,866 - CA264_11925 0.66 -0.4
2,772,866 - CA264_11925 0.66 -0.3
2,772,866 - CA264_11925 0.66 +1.2
2,772,867 + CA264_11925 0.66 -0.6
2,772,867 + CA264_11925 0.66 -0.5
2,772,867 + CA264_11925 0.66 +0.0
2,773,017 + +0.5
2,773,017 + -0.1
2,773,036 + -0.7
2,773,094 + +0.2
2,773,106 + +0.0
2,773,107 - +3.0
2,773,107 - -0.8
2,773,107 - -0.3
2,773,321 + CA264_11930 0.29 -0.6
2,773,543 - CA264_11930 0.56 +0.6
2,773,543 - CA264_11930 0.56 +0.4
2,773,544 + CA264_11930 0.57 +1.0
2,773,545 - CA264_11930 0.57 -0.2
2,773,547 - CA264_11930 0.57 -0.2
2,773,547 - CA264_11930 0.57 +1.5
2,773,557 + CA264_11930 0.58 +2.6
2,773,659 - CA264_11930 0.71 -0.9
2,773,867 - -0.7
2,773,886 + -0.3
2,773,887 - +0.2
2,773,887 - +0.0
2,773,962 + -0.8
2,773,962 + +2.0
2,773,963 - +2.6
2,773,964 + -0.6
2,773,973 - +1.5
2,773,977 + -1.3
2,773,982 + -0.3
2,773,986 + +2.6
2,773,986 + -0.4
2,773,987 - +0.0
2,773,991 - +0.7
2,773,991 - -2.5
2,773,991 - -0.7
2,773,994 + -0.0
2,773,994 + +0.6
2,773,994 + -0.7
2,773,995 - -0.5
2,773,995 - +0.5
2,774,005 + -0.3
2,774,005 + -0.0
2,774,005 + -1.0
2,774,006 - -1.3
2,774,063 + +2.0
2,774,079 + +0.5
2,774,088 - +1.6
2,774,088 - -0.6
2,774,108 + -0.4
2,774,108 + -0.5
2,774,109 - -0.4
2,774,109 - -1.0
2,774,109 - -1.3
2,774,114 + -0.3
2,774,229 - -0.8
2,774,287 + +0.4
2,774,310 + -0.4
2,774,311 - +0.5
2,774,311 - -1.0
2,774,708 - CA264_11935 0.73 -1.5
2,774,708 - CA264_11935 0.73 +2.0
2,774,721 + CA264_11935 0.75 -0.3
2,774,731 + CA264_11935 0.77 +0.2
2,774,773 + CA264_11935 0.84 -0.8
2,774,806 - CA264_11935 0.89 +0.0
2,774,811 - -1.8
2,774,830 + -1.5
2,774,830 + -0.1
2,774,830 + +0.0
2,774,831 - +0.5
2,774,831 - -0.5
2,774,869 + -0.4
2,774,869 + +0.8
2,774,869 + -0.0
2,774,869 + +2.4
2,774,880 + +0.2

Or see this region's nucleotide sequence