Experiment: m.b. Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09425 and CA264_09430 are separated by 148 nucleotides CA264_09430 and CA264_09435 are separated by 1 nucleotides
CA264_09425: CA264_09425 - hypothetical protein, at 2,202,256 to 2,203,800
_09425
CA264_09430: CA264_09430 - 2-isopropylmalate synthase, at 2,203,949 to 2,205,115
_09430
CA264_09435: CA264_09435 - 3-isopropylmalate dehydratase large subunit, at 2,205,117 to 2,206,511
_09435
Position (kb)
2203
2204
2205
2206 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2202.952 kb on - strand, within CA264_09425 at 2202.972 kb on + strand, within CA264_09425 at 2202.990 kb on - strand, within CA264_09425 at 2203.030 kb on - strand, within CA264_09425 at 2203.072 kb on - strand, within CA264_09425 at 2203.089 kb on - strand, within CA264_09425 at 2203.089 kb on - strand, within CA264_09425 at 2203.089 kb on - strand, within CA264_09425 at 2203.092 kb on - strand, within CA264_09425 at 2203.092 kb on - strand, within CA264_09425 at 2203.119 kb on - strand, within CA264_09425 at 2203.154 kb on - strand, within CA264_09425 at 2203.232 kb on + strand, within CA264_09425 at 2203.234 kb on + strand, within CA264_09425 at 2203.235 kb on - strand, within CA264_09425 at 2203.235 kb on - strand, within CA264_09425 at 2203.241 kb on + strand, within CA264_09425 at 2203.350 kb on + strand, within CA264_09425 at 2203.350 kb on + strand, within CA264_09425 at 2203.352 kb on + strand at 2203.353 kb on - strand, within CA264_09425 at 2203.353 kb on - strand, within CA264_09425 at 2203.406 kb on - strand, within CA264_09425 at 2203.433 kb on - strand, within CA264_09425 at 2203.463 kb on + strand, within CA264_09425 at 2203.464 kb on - strand, within CA264_09425 at 2203.494 kb on - strand, within CA264_09425 at 2203.498 kb on + strand, within CA264_09425 at 2203.498 kb on + strand, within CA264_09425 at 2203.499 kb on - strand, within CA264_09425 at 2203.516 kb on + strand, within CA264_09425 at 2203.517 kb on - strand, within CA264_09425 at 2203.517 kb on - strand, within CA264_09425 at 2203.541 kb on + strand, within CA264_09425 at 2203.823 kb on - strand at 2203.844 kb on - strand at 2203.872 kb on - strand at 2204.043 kb on + strand at 2204.043 kb on + strand at 2204.271 kb on + strand, within CA264_09430 at 2204.271 kb on + strand, within CA264_09430 at 2204.272 kb on - strand, within CA264_09430 at 2204.290 kb on + strand, within CA264_09430 at 2204.455 kb on - strand, within CA264_09430 at 2204.489 kb on + strand, within CA264_09430 at 2204.513 kb on + strand, within CA264_09430 at 2204.708 kb on + strand, within CA264_09430 at 2204.879 kb on + strand, within CA264_09430 at 2204.915 kb on - strand, within CA264_09430 at 2204.985 kb on - strand, within CA264_09430 at 2205.011 kb on - strand at 2205.017 kb on + strand at 2205.018 kb on - strand at 2205.192 kb on + strand at 2205.220 kb on + strand at 2205.220 kb on + strand at 2205.365 kb on - strand, within CA264_09435 at 2205.393 kb on + strand, within CA264_09435 at 2205.394 kb on - strand, within CA264_09435 at 2205.426 kb on + strand, within CA264_09435 at 2205.449 kb on - strand, within CA264_09435 at 2205.449 kb on - strand, within CA264_09435 at 2205.512 kb on + strand, within CA264_09435 at 2205.513 kb on - strand, within CA264_09435 at 2205.562 kb on + strand, within CA264_09435 at 2205.764 kb on + strand, within CA264_09435 at 2205.765 kb on - strand, within CA264_09435 at 2205.787 kb on + strand, within CA264_09435 at 2205.787 kb on + strand, within CA264_09435 at 2205.814 kb on + strand, within CA264_09435 at 2205.912 kb on + strand, within CA264_09435 at 2205.913 kb on - strand, within CA264_09435 at 2205.941 kb on - strand, within CA264_09435 at 2205.984 kb on + strand, within CA264_09435 at 2205.985 kb on - strand, within CA264_09435 at 2205.985 kb on - strand, within CA264_09435 at 2206.081 kb on - strand, within CA264_09435 at 2206.081 kb on - strand, within CA264_09435
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml remove 2,202,952 - CA264_09425 0.45 -0.5 2,202,972 + CA264_09425 0.46 -0.5 2,202,990 - CA264_09425 0.48 -0.3 2,203,030 - CA264_09425 0.50 -0.3 2,203,072 - CA264_09425 0.53 -0.1 2,203,089 - CA264_09425 0.54 +0.0 2,203,089 - CA264_09425 0.54 -0.3 2,203,089 - CA264_09425 0.54 -0.1 2,203,092 - CA264_09425 0.54 +0.7 2,203,092 - CA264_09425 0.54 -0.3 2,203,119 - CA264_09425 0.56 +0.6 2,203,154 - CA264_09425 0.58 +0.9 2,203,232 + CA264_09425 0.63 -0.3 2,203,234 + CA264_09425 0.63 +1.5 2,203,235 - CA264_09425 0.63 -0.6 2,203,235 - CA264_09425 0.63 +2.4 2,203,241 + CA264_09425 0.64 +0.7 2,203,350 + CA264_09425 0.71 -0.1 2,203,350 + CA264_09425 0.71 +0.4 2,203,352 + +0.9 2,203,353 - CA264_09425 0.71 +0.5 2,203,353 - CA264_09425 0.71 -0.6 2,203,406 - CA264_09425 0.74 -0.8 2,203,433 - CA264_09425 0.76 -0.1 2,203,463 + CA264_09425 0.78 -0.4 2,203,464 - CA264_09425 0.78 -0.2 2,203,494 - CA264_09425 0.80 +0.9 2,203,498 + CA264_09425 0.80 -0.5 2,203,498 + CA264_09425 0.80 -0.0 2,203,499 - CA264_09425 0.80 +0.1 2,203,516 + CA264_09425 0.82 -1.2 2,203,517 - CA264_09425 0.82 -0.3 2,203,517 - CA264_09425 0.82 +0.3 2,203,541 + CA264_09425 0.83 -0.1 2,203,823 - -0.6 2,203,844 - +0.0 2,203,872 - +0.3 2,204,043 + -1.1 2,204,043 + -0.6 2,204,271 + CA264_09430 0.28 +0.2 2,204,271 + CA264_09430 0.28 +0.8 2,204,272 - CA264_09430 0.28 +1.2 2,204,290 + CA264_09430 0.29 -2.1 2,204,455 - CA264_09430 0.43 -1.9 2,204,489 + CA264_09430 0.46 -0.4 2,204,513 + CA264_09430 0.48 +1.9 2,204,708 + CA264_09430 0.65 +1.6 2,204,879 + CA264_09430 0.80 +0.1 2,204,915 - CA264_09430 0.83 -0.0 2,204,985 - CA264_09430 0.89 +1.4 2,205,011 - -0.1 2,205,017 + +0.3 2,205,018 - +1.0 2,205,192 + +0.9 2,205,220 + -0.1 2,205,220 + -1.4 2,205,365 - CA264_09435 0.18 -0.3 2,205,393 + CA264_09435 0.20 -1.6 2,205,394 - CA264_09435 0.20 -0.1 2,205,426 + CA264_09435 0.22 +0.9 2,205,449 - CA264_09435 0.24 -2.4 2,205,449 - CA264_09435 0.24 -1.5 2,205,512 + CA264_09435 0.28 -1.4 2,205,513 - CA264_09435 0.28 -0.6 2,205,562 + CA264_09435 0.32 +0.0 2,205,764 + CA264_09435 0.46 +0.4 2,205,765 - CA264_09435 0.46 -0.6 2,205,787 + CA264_09435 0.48 -0.3 2,205,787 + CA264_09435 0.48 +0.1 2,205,814 + CA264_09435 0.50 -0.9 2,205,912 + CA264_09435 0.57 -1.1 2,205,913 - CA264_09435 0.57 -0.9 2,205,941 - CA264_09435 0.59 -0.5 2,205,984 + CA264_09435 0.62 -0.4 2,205,985 - CA264_09435 0.62 -1.5 2,205,985 - CA264_09435 0.62 -0.2 2,206,081 - CA264_09435 0.69 -0.5 2,206,081 - CA264_09435 0.69 -0.7
Or see this region's nucleotide sequence