Experiment: m.b. Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08485 and CA264_08490 are separated by 697 nucleotides CA264_08490 and CA264_08495 are separated by 372 nucleotides
CA264_08485: CA264_08485 - hypothetical protein, at 1,969,280 to 1,972,540
_08485
CA264_08490: CA264_08490 - hypothetical protein, at 1,973,238 to 1,973,480
_08490
CA264_08495: CA264_08495 - PAS domain-containing sensor histidine kinase, at 1,973,853 to 1,974,941
_08495
Position (kb)
1973
1974 Strain fitness (log2 ratio)
-2
-1
0
1 at 1972.316 kb on + strand at 1972.317 kb on - strand at 1972.368 kb on + strand at 1972.413 kb on + strand at 1972.414 kb on - strand at 1972.511 kb on - strand at 1972.524 kb on + strand at 1972.533 kb on - strand at 1972.533 kb on - strand at 1972.536 kb on - strand at 1972.553 kb on + strand at 1972.556 kb on + strand at 1972.557 kb on - strand at 1972.590 kb on + strand at 1972.780 kb on + strand at 1972.780 kb on + strand at 1972.780 kb on + strand at 1972.780 kb on + strand at 1972.780 kb on + strand at 1972.781 kb on - strand at 1972.781 kb on - strand at 1972.828 kb on + strand at 1972.828 kb on + strand at 1972.868 kb on + strand at 1972.877 kb on + strand at 1972.925 kb on + strand at 1973.034 kb on + strand at 1973.034 kb on + strand at 1973.035 kb on - strand at 1973.035 kb on - strand at 1973.035 kb on - strand at 1973.035 kb on - strand at 1973.042 kb on + strand at 1973.042 kb on + strand at 1973.042 kb on + strand at 1973.042 kb on + strand at 1973.043 kb on - strand at 1973.043 kb on - strand at 1973.043 kb on - strand at 1973.043 kb on - strand at 1973.043 kb on - strand at 1973.043 kb on - strand at 1973.082 kb on + strand at 1973.083 kb on - strand at 1973.193 kb on + strand at 1973.202 kb on + strand at 1973.202 kb on + strand at 1973.264 kb on + strand, within CA264_08490 at 1973.359 kb on + strand, within CA264_08490 at 1973.359 kb on + strand, within CA264_08490 at 1973.428 kb on - strand, within CA264_08490 at 1973.499 kb on + strand at 1973.500 kb on - strand at 1973.510 kb on - strand at 1973.521 kb on - strand at 1973.607 kb on - strand at 1973.672 kb on - strand at 1973.672 kb on - strand at 1973.788 kb on + strand at 1973.789 kb on - strand at 1973.790 kb on + strand at 1973.791 kb on - strand at 1973.816 kb on + strand at 1973.842 kb on - strand at 1973.847 kb on - strand at 1973.848 kb on + strand at 1973.849 kb on - strand at 1973.852 kb on + strand at 1973.852 kb on + strand at 1973.879 kb on - strand at 1973.879 kb on - strand at 1973.885 kb on + strand at 1973.887 kb on + strand at 1973.887 kb on + strand at 1973.888 kb on - strand at 1973.888 kb on - strand at 1973.888 kb on - strand at 1973.919 kb on + strand at 1973.920 kb on - strand at 1973.980 kb on + strand, within CA264_08495 at 1973.981 kb on - strand, within CA264_08495 at 1974.003 kb on - strand, within CA264_08495 at 1974.003 kb on - strand, within CA264_08495 at 1974.028 kb on + strand, within CA264_08495 at 1974.033 kb on + strand, within CA264_08495 at 1974.033 kb on + strand, within CA264_08495 at 1974.033 kb on + strand, within CA264_08495 at 1974.034 kb on + strand, within CA264_08495 at 1974.034 kb on - strand, within CA264_08495 at 1974.068 kb on + strand, within CA264_08495 at 1974.069 kb on - strand, within CA264_08495 at 1974.072 kb on + strand, within CA264_08495 at 1974.072 kb on + strand, within CA264_08495 at 1974.073 kb on - strand, within CA264_08495 at 1974.073 kb on - strand, within CA264_08495 at 1974.194 kb on + strand, within CA264_08495 at 1974.197 kb on - strand, within CA264_08495 at 1974.226 kb on - strand, within CA264_08495 at 1974.334 kb on + strand, within CA264_08495 at 1974.343 kb on + strand, within CA264_08495 at 1974.355 kb on + strand, within CA264_08495 at 1974.355 kb on + strand, within CA264_08495 at 1974.356 kb on - strand, within CA264_08495
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml remove 1,972,316 + -0.7 1,972,317 - -1.2 1,972,368 + +0.1 1,972,413 + -0.0 1,972,414 - -0.0 1,972,511 - +0.1 1,972,524 + +0.8 1,972,533 - +0.0 1,972,533 - +0.4 1,972,536 - -0.3 1,972,553 + +0.2 1,972,556 + +0.3 1,972,557 - +1.5 1,972,590 + -0.2 1,972,780 + +0.5 1,972,780 + -0.1 1,972,780 + -1.2 1,972,780 + -0.2 1,972,780 + -0.2 1,972,781 - -2.0 1,972,781 - -0.3 1,972,828 + +1.5 1,972,828 + +1.3 1,972,868 + +0.0 1,972,877 + +0.3 1,972,925 + -0.3 1,973,034 + -1.4 1,973,034 + -1.1 1,973,035 - +1.4 1,973,035 - -0.8 1,973,035 - -0.4 1,973,035 - +0.6 1,973,042 + +0.4 1,973,042 + -1.0 1,973,042 + -0.5 1,973,042 + -0.6 1,973,043 - -1.8 1,973,043 - -0.5 1,973,043 - +0.2 1,973,043 - -0.0 1,973,043 - -1.8 1,973,043 - -0.9 1,973,082 + -0.2 1,973,083 - +0.4 1,973,193 + -0.1 1,973,202 + +0.8 1,973,202 + +0.2 1,973,264 + CA264_08490 0.11 +0.5 1,973,359 + CA264_08490 0.50 +0.3 1,973,359 + CA264_08490 0.50 -0.8 1,973,428 - CA264_08490 0.78 +0.1 1,973,499 + -0.7 1,973,500 - +0.7 1,973,510 - +0.3 1,973,521 - +0.5 1,973,607 - -0.2 1,973,672 - -0.6 1,973,672 - +0.1 1,973,788 + -0.3 1,973,789 - +0.2 1,973,790 + +0.1 1,973,791 - +0.1 1,973,816 + -0.2 1,973,842 - -0.3 1,973,847 - +0.5 1,973,848 + +0.4 1,973,849 - -0.3 1,973,852 + -0.4 1,973,852 + +0.0 1,973,879 - -1.5 1,973,879 - -0.3 1,973,885 + -0.3 1,973,887 + +0.8 1,973,887 + -0.1 1,973,888 - +0.4 1,973,888 - +0.5 1,973,888 - -0.0 1,973,919 + -0.0 1,973,920 - -0.0 1,973,980 + CA264_08495 0.12 +0.3 1,973,981 - CA264_08495 0.12 -0.3 1,974,003 - CA264_08495 0.14 -1.1 1,974,003 - CA264_08495 0.14 -0.9 1,974,028 + CA264_08495 0.16 -0.4 1,974,033 + CA264_08495 0.17 -1.9 1,974,033 + CA264_08495 0.17 -0.4 1,974,033 + CA264_08495 0.17 -0.4 1,974,034 + CA264_08495 0.17 -0.5 1,974,034 - CA264_08495 0.17 -0.2 1,974,068 + CA264_08495 0.20 +0.3 1,974,069 - CA264_08495 0.20 -0.8 1,974,072 + CA264_08495 0.20 -0.8 1,974,072 + CA264_08495 0.20 -1.0 1,974,073 - CA264_08495 0.20 -0.2 1,974,073 - CA264_08495 0.20 -0.1 1,974,194 + CA264_08495 0.31 -0.4 1,974,197 - CA264_08495 0.32 -0.1 1,974,226 - CA264_08495 0.34 -0.3 1,974,334 + CA264_08495 0.44 +0.7 1,974,343 + CA264_08495 0.45 -0.6 1,974,355 + CA264_08495 0.46 -0.9 1,974,355 + CA264_08495 0.46 -0.2 1,974,356 - CA264_08495 0.46 +0.5
Or see this region's nucleotide sequence